View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10088_low_10 (Length: 249)
Name: NF10088_low_10
Description: NF10088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10088_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41656943 - 41657171
Alignment:
| Q |
1 |
tttaaattgcaaaaatattatattgtttttgctttattttattattttcaattacttacttgtgtagagaaaataaaaacagataataaagttaagaagg |
100 |
Q |
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| T |
41656943 |
tttaaattgcaaaaatattatattgtttttgctttattttattattttcaattacttacttgtgtagagaaaataaaaacagataataaagttaagaagg |
41657042 |
T |
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| Q |
101 |
tgtgttgtcttcaaaccaagcatgtcattgaattgcagaaactacaaacattgcgatccttgtgaattgtgattgttaaaaattgcgaatgaatatggct |
200 |
Q |
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| T |
41657043 |
tgtgttgtcttcaaaccaagcatgtcattgaattgcagaaactacaaacattgcgatccttgtgaattgtgattgttaaaaattgcgaatgaatctggct |
41657142 |
T |
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| Q |
201 |
tacgtgcaattgggctggctatagttgca |
229 |
Q |
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| T |
41657143 |
tacgtgcaattgggctggctatagttgca |
41657171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 43223658 - 43223433
Alignment:
| Q |
3 |
taaattgcaaaaatattatattgtttttgctttattttattattttcaattacttacttgtgtagagaaaataaaaacagataataaagttaagaaggtg |
102 |
Q |
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| T |
43223658 |
taaattgcaaaaatattatcttgcttttgctttattttattattttcaattacttacttgtgtagagaaaataaaaacagataataaagttaaaaaggtg |
43223559 |
T |
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| Q |
103 |
tgttgtcttcaaaccaagcatgtcattgaattgcagaaactacaaacattgcgatccttgtgaattgtgattgttaaaaattgcgaatgaatatggctta |
202 |
Q |
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| T |
43223558 |
tgtggtcttcaaaccaagaatgccattgaattgcagaaactacaaacattgtgatccttgtgaattgtgattgtaaaaaattgcgaatgaatccggctta |
43223459 |
T |
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| Q |
203 |
cgtgcaattgggctggctatagttgca |
229 |
Q |
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| T |
43223458 |
cgtgcaattgagct-gctatagttgca |
43223433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 43212750 - 43212659
Alignment:
| Q |
60 |
ttgtgtagagaaaataaaaacagataataaagttaagaaggtgtgttgtcttcaaaccaagcatgtcattgaattgcagaaactacaaacatt |
152 |
Q |
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| T |
43212750 |
ttgtgtagagaaaatgaaaacaaaaaataagattaaaacggtatgttgtcttgaaatcgagcatct-attaaattgcagaaactacaaacatt |
43212659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 43227154 - 43227095
Alignment:
| Q |
110 |
ttcaaaccaagcatgtcattgaattgcagaaactacaaacattgcgatccttgtgaattgtg |
171 |
Q |
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| T |
43227154 |
ttcaaaccaagcat--cattaaagtgctgaaactacaaacattatgatccttgtgaattgtg |
43227095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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