View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10088_low_2 (Length: 422)
Name: NF10088_low_2
Description: NF10088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10088_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 54 - 405
Target Start/End: Original strand, 42144021 - 42144372
Alignment:
| Q |
54 |
gggttgaatgtatatagttgataaaagtaaactcatattacctgctagcagaaggagcaaacccaactgtaaaatatgtaagtacaatccatatcaaaga |
153 |
Q |
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| T |
42144021 |
gggttgaatgtatatagttgataaaagtaaactcatattacctgctagcagaaggagcaaacccaactgtaaaatatgtaagtacaatccatatcaaaga |
42144120 |
T |
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| Q |
154 |
ttccaaaaaggagatcgggatcctaagaatccatataggtaatccaaatgcccatgcagggtaaaacaagaaatccctctgtttgtggaacacaggaagc |
253 |
Q |
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| T |
42144121 |
ttccaaaaaggagatcgggaccctaagaatccatataggtaatccaaatgcccatgcagggtaaaacaagaaatccctctgtttgtggaacacaggaagc |
42144220 |
T |
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| Q |
254 |
ctagcaactgtcatgtatacttctgccaacccattaaacatcacatttatcagagtgaagaataatgcaccgtagaatttttgtccatcttgaacagtac |
353 |
Q |
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| T |
42144221 |
ctagcaactgtcatgtatacttctgccaacccattaaacatcacatttatcagagtgaagaataatgcaccgtagaatttttgtccatcttgaacagtac |
42144320 |
T |
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| Q |
354 |
caaccggcatctttgttctaaagaacacagtaaaagtaataacagacatgat |
405 |
Q |
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| T |
42144321 |
caaccggcatctttgttctaaagaacacagtaaaagtaataacagacatgat |
42144372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 64 - 405
Target Start/End: Original strand, 42155977 - 42156319
Alignment:
| Q |
64 |
tatatagtt-gataaaagtaaactcatattacctgctagcagaaggagcaaacccaactgtaaaatatgtaagtacaatccatatcaaagattccaaaaa |
162 |
Q |
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| T |
42155977 |
tatatagttcgaaaaaagtacactcatattacctgctagcagaaggagcgaacccaattgtaaaatatgtaagaacaatccatatcgctgattccaaaaa |
42156076 |
T |
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| Q |
163 |
ggagatcgggatcctaagaatccatataggtaatccaaatgcccatgcagggtaaaacaagaaatccctctgtttgtggaacacaggaagcctagcaact |
262 |
Q |
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| T |
42156077 |
ggaaagaggaatcctaagaatccatatgggtaatccaaatgcccatgcaggataaaacatgaaatccctttgtttatagaacacaggaagcctagcaaca |
42156176 |
T |
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| Q |
263 |
gtcatgtatacttctgccaacccattaaacatcacatttatcagagtgaagaataatgcaccgtagaatttttgtccatcttgaacagtaccaaccggca |
362 |
Q |
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|||||| ||| |||||||| |||||| ||||||||||||||||| || || ||||||||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
42156177 |
gtcatggatagttctgccatcccattgaacatcacatttatcagtgtaaaaaataatgcaccatggaatttttgtccatcttgaacagtaccaacaggca |
42156276 |
T |
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| Q |
363 |
tctttgttctaaagaacacagtaaaagtaataacagacatgat |
405 |
Q |
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| T |
42156277 |
tctttgttctaaagaacacagtaaaagtaataatagaaatgat |
42156319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 64 - 405
Target Start/End: Original strand, 42175149 - 42175491
Alignment:
| Q |
64 |
tatatagtt-gataaaagtaaactcatattacctgctagcagaaggagcaaacccaactgtaaaatatgtaagtacaatccatatcaaagattccaaaaa |
162 |
Q |
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||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| ||||||| ||| |
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| T |
42175149 |
tatatagttcgaaaaaagtacactcatattacctgctagcagaaggagcgaacccaattgtaaaatatgtaagaacaatccatatcgctgattccataaa |
42175248 |
T |
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| Q |
163 |
ggagatcgggatcctaagaatccatataggtaatccaaatgcccatgcagggtaaaacaagaaatccctctgtttgtggaacacaggaagcctagcaact |
262 |
Q |
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||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||| || |||||| ||||||| ||||||||| |||||| |||| |
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| T |
42175249 |
ggaaagagggatcctaagaatccatatgggtaatgcaaatgcccatgcagggtaaaacatgatatccctttgtttgtagaacacaggtagcctataaact |
42175348 |
T |
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| Q |
263 |
gtcatgtatacttctgccaacccattaaacatcacatttatcagagtgaagaataatgcaccgtagaatttttgtccatcttgaacagtaccaaccggca |
362 |
Q |
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|||||| ||| |||||||| |||||| |||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
42175349 |
gtcatggatagttctgccatcccattgaacatcacatttatcattgtaaagaataatgcaccatggaatttttgtccatcttgaacagtaccaaccggca |
42175448 |
T |
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| Q |
363 |
tctttgttctaaagaacacagtaaaagtaataacagacatgat |
405 |
Q |
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| T |
42175449 |
tttttgttctaaagaacacagtaaaagtaataatagacatgat |
42175491 |
T |
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