View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10088_low_3 (Length: 414)
Name: NF10088_low_3
Description: NF10088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10088_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 33 - 401
Target Start/End: Original strand, 22059017 - 22059378
Alignment:
| Q |
33 |
atgcaacttaaacattttattttgaacagctatcctatttgcaacacttaatacttgtttatgacatattcaagaaggacttaacgtaactaacttagca |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22059017 |
atgcaacttaaacattttattttgaacagctatcctatttgcaacacttaatacttgtttatgacatattcaagaaggacttaacgtgactaacttagca |
22059116 |
T |
|
| Q |
133 |
tacagcatacaggcctggaaatgactatcagaagtgcggaatttagagacatattttggtttaagaggacaaccacataagtacggtagcagactcaaac |
232 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
22059117 |
tacaga-------cctggaaatgactatcagaagtgcggaatttagagacatatttcggtttaagaggataaccacataagtacggtagcaaactcaaac |
22059209 |
T |
|
| Q |
233 |
taattatcttgaacgaaatacacaaagaaattacatcttggtaacttttagtagatttgaacgattatgatcgacaaatcggaacttcaaaacatcacca |
332 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22059210 |
taattaacttgaacgaaatacacaaagaaattacatcttggtaagttttattagatttgaacgattatgatcgacaaatcggaacttcaaaacatcacca |
22059309 |
T |
|
| Q |
333 |
tctgcaaagttatttactgcggcaaccaaattccagtcgcttccaaattcagtccatgattttctgcct |
401 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22059310 |
tctgcaaagttatttactgcagcaaccaaattccagtcgcttccaaattaagtccatgattttctgcct |
22059378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 167 - 388
Target Start/End: Complemental strand, 31772348 - 31772127
Alignment:
| Q |
167 |
tgcggaatttagagacatattttggtttaagaggacaaccacataagtacggtagcagactcaaactaattatcttgaacgaaatacacaaagaaattac |
266 |
Q |
| |
|
||||||||||| | ||||||| || ||||| ||||||||||||||| | ||||||| ||| |||||||||| ||||||||||||| || || |||| || |
|
|
| T |
31772348 |
tgcggaatttataaacatattatgatttaaaaggacaaccacataacttaggtagcaaactgaaactaattaacttgaacgaaataaacgaacaaatcac |
31772249 |
T |
|
| Q |
267 |
atcttggtaacttttagtagatttgaacgattatgatcgacaaatcggaacttcaaaacatcaccatctgcaaagttatttactgcggcaaccaaattcc |
366 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
31772248 |
atctcggtaacttttatcagatttgaacgattatgatctacaaatcggaacttcaaaacatcacctttcgcaaagttatttactgcatcaaccaaattcc |
31772149 |
T |
|
| Q |
367 |
agtcgcttccaaattcagtcca |
388 |
Q |
| |
|
|||| |||||||| |||||||| |
|
|
| T |
31772148 |
agtcacttccaaactcagtcca |
31772127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Original strand, 22050008 - 22050050
Alignment:
| Q |
359 |
caaattccagtcgcttccaaattcagtccatgattttctgcct |
401 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
22050008 |
caaattccagtcccttccgaattcagtccatgattttttgcct |
22050050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University