View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10088_low_4 (Length: 398)
Name: NF10088_low_4
Description: NF10088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10088_low_4 |
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| [»] scaffold0229 (2 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 88 - 322
Target Start/End: Original strand, 16983 - 17217
Alignment:
| Q |
88 |
ttttggaataaaaagggaataatttgtgggattccagcatcatctaggttaactgtacataaattagcaaaagacaactttaacttatcaactttggcag |
187 |
Q |
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| T |
16983 |
ttttggaataaaaagggaataatttgtgggattccagcatcatctaggttaactgtacataaattagcaaaagacaactttaacttatcaactttggcag |
17082 |
T |
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| Q |
188 |
ggtgttccaaaaggttgcaatggaaaatgtattggaatattgagcttttgattgttaatgtttttagtgcattgcacccatcaaaaggacaccaaaagtt |
287 |
Q |
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| T |
17083 |
ggtgttccaaaaggttgcaatggaaaatgtattggaatattgagcttttgattgttaatgtttttagtgcattgcacccatcaaaaggacaccaaaagtt |
17182 |
T |
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| Q |
288 |
ataaggtaaaagcatgtgcacgaggttgtaagaat |
322 |
Q |
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| T |
17183 |
ataaggtaaaagcatgtgcacgaggttgtaagaat |
17217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 317 - 392
Target Start/End: Original strand, 17239 - 17314
Alignment:
| Q |
317 |
aagaatggtgtggttacaattttttctataccagtttaagcttaatgcataaggtcatcttttataggaaagttta |
392 |
Q |
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| T |
17239 |
aagaatggtgtggttacaattttttctataccagtttaagcttaatgcataaggtcatcttttataggaaagttta |
17314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 88 - 322
Target Start/End: Complemental strand, 1401375 - 1401141
Alignment:
| Q |
88 |
ttttggaataaaaagggaataatttgtgggattccagcatcatctaggttaactgtacataaattagcaaaagacaactttaacttatcaactttggcag |
187 |
Q |
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| T |
1401375 |
ttttggaataaaaagggaataatttgtgggattccagcatcatctaggttaactgtacataaattagcaaaagacaactttaacttatcaactttggcag |
1401276 |
T |
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| Q |
188 |
ggtgttccaaaaggttgcaatggaaaatgtattggaatattgagcttttgattgttaatgtttttagtgcattgcacccatcaaaaggacaccaaaagtt |
287 |
Q |
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| T |
1401275 |
ggtgttccaaaaggttgcaatggaaaatgtattggaatattgagcttttgattgttaatgtttttagtgcattgcacccatcaaaaggacaccaaaagtt |
1401176 |
T |
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| Q |
288 |
ataaggtaaaagcatgtgcacgaggttgtaagaat |
322 |
Q |
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| T |
1401175 |
ataaggtaaaagcatgtgcacgaggttgtaagaat |
1401141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 88 - 261
Target Start/End: Complemental strand, 1404099 - 1403915
Alignment:
| Q |
88 |
ttttggaataaaaagggaataatttgtgggattccagcatca---------tctaggttaactgtacataaattagcaaaagacaactttaacttat--c |
176 |
Q |
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| T |
1404099 |
ttttggaataaaaagggaataatttgtgggattccagcatcacttaggtcatctaggttaagtgcacataaattagcaaacgacaactttaacttatatc |
1404000 |
T |
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| Q |
177 |
aactttggcagggtgttccaaaaggttgcaatggaaaatgtattggaatattgagcttttgattgttaatgtttttagtgcattg |
261 |
Q |
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| T |
1403999 |
aactttggcagggtgttataaaaggttgcagtggaaaatgtattggaatattgagtttttgattgtaaatgcttttagtgcattg |
1403915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 317 - 392
Target Start/End: Complemental strand, 1401119 - 1401044
Alignment:
| Q |
317 |
aagaatggtgtggttacaattttttctataccagtttaagcttaatgcataaggtcatcttttataggaaagttta |
392 |
Q |
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| T |
1401119 |
aagaatggtgtggttacaattttttctataccagtttaagcttaatgcataaggtcatcttttataggaaagttta |
1401044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 1403901 - 1403839
Alignment:
| Q |
260 |
tgcacccatcaaaaggacaccaaaagttataaggtaaaagcatgtgcacgaggttgtaagaat |
322 |
Q |
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|||||||||||||||||| ||||||| ||||| | |||| ||||||||| | ||||||||||| |
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| T |
1403901 |
tgcacccatcaaaaggaccccaaaaggtataacgcaaaaacatgtgcacaaagttgtaagaat |
1403839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Complemental strand, 1403803 - 1403774
Alignment:
| Q |
331 |
tacaattttttctataccagtttaagctta |
360 |
Q |
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| T |
1403803 |
tacaattttttctataccagtttaagctta |
1403774 |
T |
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