View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10088_low_5 (Length: 344)
Name: NF10088_low_5
Description: NF10088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10088_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 41562440 - 41562126
Alignment:
| Q |
20 |
cctttagctgtgaagtaggaatgaaagataaactaccaaaacatgcatagatgacagaacaagctttgtttgaaataagaaactttagacatttggtttc |
119 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41562440 |
cctttagttgtgaagtaggaatgaaagataaactaccaaaacatgcatagatgacagaacaagctttgtttgaaataagaaactttagacatttggtttc |
41562341 |
T |
|
| Q |
120 |
ggaatcatcgatgaatcccttatcgtctttaccaaacttgttgaaggttaacttgtcatgcaaggaaagtggtcctatacaccaaacctttttagcaact |
219 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41562340 |
ggaatcgtcgatgaatcccttatcgtctttaccaaacttgttgaaggttaacctgtcatgcaaggaaagtggtcctatacaccaaacctttttagcaact |
41562241 |
T |
|
| Q |
220 |
ttctcataacctctaacataaaccttctccagctcctcaaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41562240 |
ttctcataacctctaacataaaccttctccagctcctcaaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctc |
41562141 |
T |
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| Q |
320 |
ctttccatgcctttg |
334 |
Q |
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||||||||||||||| |
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| T |
41562140 |
ctttccatgcctttg |
41562126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 46657025 - 46656889
Alignment:
| Q |
20 |
cctttagctgtgaagtaggaatgaaagataaactaccaaaacatgcatagatgacagaacaagctttgtttgaaataagaaactttagacatttggtttc |
119 |
Q |
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||||||| ||||||| ||||||| |||| |||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||||| |
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| T |
46657025 |
cctttagttgtgaagaaggaatgtaagacaaactaccaaaacatgcatatatgacagagcaagctttgtttcaaataaaaaactttagacatttggtttc |
46656926 |
T |
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| Q |
120 |
ggaatcatcgatgaatcccttatcgtctttaccaaac |
156 |
Q |
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||||||| |||| |||||||||||| |||||||||| |
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| T |
46656925 |
agaatcattgatgcatcccttatcgtttttaccaaac |
46656889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 46656852 - 46656776
Alignment:
| Q |
258 |
aaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctcctttccatgcctttg |
334 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46656852 |
aaaagtattcaccaatattccttgtgctgagagtttagattctttgaattgatcaatagcttctttccatgcctttg |
46656776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 46656890 - 46656862
Alignment:
| Q |
200 |
accaaacctttttagcaactttctcataa |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
46656890 |
accaaacctttttagcaactttctcataa |
46656862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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