View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10088_low_7 (Length: 320)
Name: NF10088_low_7
Description: NF10088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10088_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 32424577 - 32424881
Alignment:
| Q |
1 |
gttatggtgaatgacatgtttattgtgttttatggagaatcaatgagttgtgacagtttttgttatatttatgaactatatactaaatttgattaaccat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424577 |
gttatggtgaatgacatgtttattgtgttttatggagaatcaatgagttgtgacagtttttgttatatttatgaactatatactaaatttgattaaccat |
32424676 |
T |
|
| Q |
101 |
ctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactcacatgaacaacagagtctcgggcagccagggtaagaatatcagcacag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32424677 |
ctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactcacatgaacaacagagtcccgggcagccagggtaagaatatcagcacag |
32424776 |
T |
|
| Q |
201 |
gacacaacccctgggcatgctttttccacattggctttgatgtcatcaatcacgttgaaccctctagctgaattattgttagctgctgctgttttttctc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
32424777 |
gacacaacccctgggcatgctttttccacattggctttgatgtcatcaatcacgttgaatcctctagctgaattattgttagcagctgctgttttttctc |
32424876 |
T |
|
| Q |
301 |
ctatg |
305 |
Q |
| |
|
||||| |
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| T |
32424877 |
ctatg |
32424881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 143 - 305
Target Start/End: Original strand, 32450766 - 32450928
Alignment:
| Q |
143 |
aacataactcacatgaacaacagagtctcgggcagccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatg |
242 |
Q |
| |
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||||||||| ||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| |
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| T |
32450766 |
aacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatg |
32450865 |
T |
|
| Q |
243 |
tcatcaatcacgttgaaccctctagctgaattattgttagctgctgctgttttttctcctatg |
305 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32450866 |
tcatcaatcacgttgaatcctctagctgaattattgttagctgctgctgttttctctcctatg |
32450928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 42678502 - 42678563
Alignment:
| Q |
92 |
attaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactca |
153 |
Q |
| |
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|||||| |||| | ||||||||||| |||||||||||| || |||||||| ||||||||||| |
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|
| T |
42678502 |
attaactatctgatttgtttttgaaatttgatgtcaaaattgtgtcaaaataacataactca |
42678563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 6986780 - 6986829
Alignment:
| Q |
92 |
attaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaa |
141 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| |||| |||||||||||||| |
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|
| T |
6986780 |
attaaccatctaaattattttcgaaatttgttgtctaatttatgtcaaaa |
6986829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 35226332 - 35226381
Alignment:
| Q |
63 |
ttatatttatgaactatatactaaatttgattaaccatctaaattgtttt |
112 |
Q |
| |
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|||||||||| |||||| ||| || |||||||||||||||||||||||| |
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|
| T |
35226332 |
ttatatttattaactatcaactgaacttgattaaccatctaaattgtttt |
35226381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 12117162 - 12117202
Alignment:
| Q |
92 |
attaaccatctaaattgtttttgaattttgatgtcaaattt |
132 |
Q |
| |
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||||||||| ||||||||| ||||| ||||||||||||||| |
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|
| T |
12117162 |
attaaccatataaattgttgttgaagtttgatgtcaaattt |
12117202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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