View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10088_low_8 (Length: 296)
Name: NF10088_low_8
Description: NF10088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10088_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 2254924 - 2255183
Alignment:
| Q |
9 |
agcatagggaggtttgcccctatatcaacgaacccttccataagtgcattgagtagtatcgcttgaagctattttgattggaattggatgttaaaatgta |
108 |
Q |
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| T |
2254924 |
agcattgggaggtttgcccctgtatcaacgaacccttccataagtgcattgagtagtatcgcttgaagctattttgattggaattggatgttaaaatgta |
2255023 |
T |
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| Q |
109 |
ctactgttgtcgtagaatgttttggttgatgatgaaatcttggacagctttgatgaatccttatatggaccacannnnnnnggtgctgtaaactttccct |
208 |
Q |
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| T |
2255024 |
ctactgttgtcgtagaatgttttggttgatgatgaaatcttggacagctttgatgaatctttatatggaccacatttttttggtgctgtaaactttccct |
2255123 |
T |
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| Q |
209 |
ctcgggcagtttctaataaatggcaacaacaaactcgtttgcctttataatttatggctt |
268 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2255124 |
ctcgggcattttctaataaatggcaacaacaaactcgtttgcctttataatttatggctt |
2255183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 4473903 - 4474027
Alignment:
| Q |
156 |
ctttgatgaatccttatatggaccacannnnnnnggtgctgtaaactttccctctcgggcagtttctaataaatggcaacaacaaactcgtttgccttta |
255 |
Q |
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|||||||||||||||||||| |||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
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| T |
4473903 |
ctttgatgaatccttatatgaaccacatttgtttcgtgctgtaaa-tttccctctcgggcattttctgataaatggcaacaacaaactggtttgccttta |
4474001 |
T |
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| Q |
256 |
taatttatggcttgcatgttcatttt |
281 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4474002 |
taatttatggcttgcatgttcatttt |
4474027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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