View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10088_low_9 (Length: 287)
Name: NF10088_low_9
Description: NF10088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10088_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 41166701 - 41166609
Alignment:
| Q |
45 |
ctatacaagatttttaaaatttatttattttcatttacgtgacacactcctatagtatatataaaaagtatgaacgtattaagtcacgttttg |
137 |
Q |
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| T |
41166701 |
ctatacaagatttttaaaatttatttattttcatttacgtgacacactcctatagtatatataaaaagtatgaacgtattaagtcacgttttg |
41166609 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 41166509 - 41166467
Alignment:
| Q |
240 |
tttgttggactgcactttgaattaattaccttcctatgcttct |
282 |
Q |
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| T |
41166509 |
tttgttggactgaactttgaattaattaccttcctatgcttct |
41166467 |
T |
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