View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10089_high_1 (Length: 283)
Name: NF10089_high_1
Description: NF10089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10089_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 97 - 265
Target Start/End: Original strand, 23782392 - 23782576
Alignment:
| Q |
97 |
tagttatggaaacatgtcttttgttgatgttgattttgtttataagacatttaagaattagaacacgttaattagacacaagtaatcattttaattctat |
196 |
Q |
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| T |
23782392 |
tagttttggaaacatgtcttttgttgatgttgattttgtttataagacatttaagaattagaacacgttaattagacacaagtaatccttttaattctat |
23782491 |
T |
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| Q |
197 |
tccatagttttcacttagatttct----------------gtgtaagacagtccttacacaatgtataaatagaggtttacatac |
265 |
Q |
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| T |
23782492 |
tccatagttttcacttagatttctgttttcacttaagtaggtgtaagacagtccttacacaatgtataaatagaggtttacatac |
23782576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 23782125 - 23782211
Alignment:
| Q |
19 |
ctaagctctgctaaattcagtttccatcaacataaataaaatatcatagaagttggacagtcatgagattcttataaatagttatgg |
105 |
Q |
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| T |
23782125 |
ctaagctctgctaaattcagtttccatcaacataaataaaatatcatagaagttggacagtcatgagattcttataaatagttatgg |
23782211 |
T |
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