View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10089_low_1 (Length: 605)
Name: NF10089_low_1
Description: NF10089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10089_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 18 - 605
Target Start/End: Complemental strand, 52688865 - 52688287
Alignment:
| Q |
18 |
aataggatcatgatcacaacccatattggtcggtggattcgcacatgcattagttgaatggtaagaagacaaactttgacttccaagtccaaagctagga |
117 |
Q |
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| T |
52688865 |
aataggatcatgatcacaacccatattggtcggtgtattcgcacatgcattagttgaatggtaagaagacaaacgttgacttccaagtccaaagctagga |
52688766 |
T |
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| Q |
118 |
gccttctaatcttcttggtcaacctccacacatacatactccatataccatcactcttaataatataagaacaattttagaatccatattaagcttaact |
217 |
Q |
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| T |
52688765 |
gccttctaatcttcttggtcaacctccacacatacatactccatataccatcactcttaataatataagaacaattttagaatccatattaagcttaact |
52688666 |
T |
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| Q |
218 |
caagtataacctcaaacttaatcaattttcaaaccttcataaactccccataattcaacaacatatgtgttacaatgacccaaatttttggagaagccac |
317 |
Q |
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| T |
52688665 |
caagtataacctcaaacttaatcaattttcaaaccttcataaactcctcataattcaacaacatatgtgttacaatgacccaaatttttggagaagccac |
52688566 |
T |
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| Q |
318 |
acaaccacctcccattctcatctcgaaataagcaaccacaagcatatttttatcatcctttaattgtgccttcagaattcaatctaatccactaattatc |
417 |
Q |
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| T |
52688565 |
acaaccacctcccattctcatcttgaaataagcaaccacaagcatatttttatcatccttt---------ttaagaattcaatctaatccactaattatc |
52688475 |
T |
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| Q |
418 |
tagaaattttcaagctttaatagtttcatcctgttgtttgttaacatgcaccaagtttctcacctttgtgttgcgggtaacgtcccaatacgatcaaaat |
517 |
Q |
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| T |
52688474 |
tagaaatttccaagctttaatagtttcatcccgttgtttgttaacatgcaccaagtttctcacctttgtgttgcgggtaacgtcccaatacgatcaaaat |
52688375 |
T |
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| Q |
518 |
atcattcaaagatgaatactgacgtgtgatatccccaatgggagtctcaatattcctctagtgccatataaaatggcagttattcatc |
605 |
Q |
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| T |
52688374 |
atcattcaaaggtgaatattgacgtgtgatatccccaatgggagtctcaatattcctctagtgccatataaaatggcagttattcatc |
52688287 |
T |
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