View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10089_low_10 (Length: 249)
Name: NF10089_low_10
Description: NF10089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10089_low_10 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 58070 - 58299
Alignment:
| Q |
1 |
cttaccatcaatatccaccaactgagtaagcttgcagtctttgcatatatgatgctttactattttcactattttttatcagaaatcctttatccaacca |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
58070 |
cttaccatcaatatccaccaactcagtaagcttgcagtctttgcatatatgatgctttactattttcactatctttgatcagaaatcctttatccaacca |
58169 |
T |
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| Q |
101 |
acagtcatcctatgcatgaacacccatgcatgaacacaagctgtgccaagttcttccataagccagaatcacttggcttaactattatcatatccaatgc |
200 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
58170 |
acagtcatcc--------------catgcacgaacacaagctgtgccaagttcttccataagccagaatcacttggcttagctattaccatatccaatgc |
58255 |
T |
|
| Q |
201 |
tatattgcttccatcatattttccttttaagagtcaacaccaaa |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
58256 |
tatattgcttccatcatattttccttttaagagtcgacaccaaa |
58299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29063970 - 29063765
Alignment:
| Q |
1 |
cttaccatcaatatccaccaactgagtaagcttgcagtctttgcatatatgatgctttactattttcactattttttatcagaaatcctttatccaacca |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
29063970 |
cttaccatcaatatccaccaactcagtaagcttgcagtctttgcatatatgatggtttactattttcactatctttgatcagaaatcctttatccaacca |
29063871 |
T |
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| Q |
101 |
acagtcatcctatgcatgaacacccatgcatgaacacaagctgtgccaagttcttccataagccagaatcacttggcttaactattatcatatccaatgc |
200 |
Q |
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| T |
29063870 |
tc---------------------ccatgcacgaacacaagttgtgccaagttcttccataagtcagaatcacttggcttagctattaccatatccaatgc |
29063792 |
T |
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| Q |
201 |
tatattgcttccatcatattttccttt |
227 |
Q |
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| T |
29063791 |
tatattgcttccatcatattttccttt |
29063765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29118824 - 29118619
Alignment:
| Q |
1 |
cttaccatcaatatccaccaactgagtaagcttgcagtctttgcatatatgatgctttactattttcactattttttatcagaaatcctttatccaacca |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
29118824 |
cttaccatcaatatccaccaactcagtaagcttgcagtctttgcatatatgatggtttactattttcactatctttgatcagaaatcctttatccaacca |
29118725 |
T |
|
| Q |
101 |
acagtcatcctatgcatgaacacccatgcatgaacacaagctgtgccaagttcttccataagccagaatcacttggcttaactattatcatatccaatgc |
200 |
Q |
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| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |
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| T |
29118724 |
tc---------------------ccatgcacgaacacaagttgtgccaagttcttccataagtcagaatcacttggcttagctattaccatatccaatgc |
29118646 |
T |
|
| Q |
201 |
tatattgcttccatcatattttccttt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
29118645 |
tatattgcttccatcatattttccttt |
29118619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 29880215 - 29880102
Alignment:
| Q |
6 |
catcaatatccaccaactgagtaagcttgcagtctttgcatatatgatgctttactattttcactattttttatcagaaatcctttatccaaccaacagt |
105 |
Q |
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|||||| ||||||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||| ||| ||| |||||||| ||||||||| |||| |
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| T |
29880215 |
catcaacatccaccaactcagtaagcttgcagtctt-gcatatctgatggtttactattttcactatctttgatccgaaatcctctatccaacc--cagt |
29880119 |
T |
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| Q |
106 |
catcctatgcatgaacac |
123 |
Q |
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||||| ||||| |||||| |
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| T |
29880118 |
catcc-atgcacgaacac |
29880102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 29880045 - 29879998
Alignment:
| Q |
194 |
ccaatgctatattgcttccatcatattttccttttaagagtcaacacc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29880045 |
ccaatgctatattgcttccatcatattttccttttaagagtcgacacc |
29879998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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