View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10089_low_12 (Length: 237)
Name: NF10089_low_12
Description: NF10089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10089_low_12 |
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| [»] scaffold0054 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 57853 - 58074
Alignment:
| Q |
16 |
cttaggacaacactcgattacattgcgatgtcatgtaagattgatctcgatcataatgtgtcacatgttaccctatattnnnnnnnnttaattaattaat |
115 |
Q |
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| T |
57853 |
cttaggacaacactcgattacattgcgatgtcatgtaaaattgatctcgatcacaatgtgtcacatgttaccctatattaaaaaaatttaatttatttat |
57952 |
T |
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| Q |
116 |
tttatcaaaattaattgtattaggttctaacatatagtaaaagggtgtcaattgtttttgttgtaaaaattaattcggtttgatcattcttcaacgtcaa |
215 |
Q |
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| T |
57953 |
tttatcaaaattaattgtattagattctaacatatagtataagggtgtcaattgtttttgttgtaaaaattaattcggtttgatcattcttcatcgtcaa |
58052 |
T |
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| Q |
216 |
ttgtgagttctactaaacttac |
237 |
Q |
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| T |
58053 |
ttgtgagttctactaaacttac |
58074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 29064100 - 29063966
Alignment:
| Q |
103 |
ttaattaattaattttatcaaaattaattgtattaggttctaacatatagtaaaagggtgtcaattgtttttgttgtaaaaattaattcggtttgatcat |
202 |
Q |
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| T |
29064100 |
ttaattaaattattttatcaaaattaattgtattagattctaacatatagtaaaagggtgtcaattgtttttattgtaaaaattaattcggtttgattat |
29064001 |
T |
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| Q |
203 |
tcttcaacgtcaattgtgagttctactaaacttac |
237 |
Q |
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| T |
29064000 |
tcttcatcgtcaattgtgagttctactaaacttac |
29063966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 29118954 - 29118820
Alignment:
| Q |
103 |
ttaattaattaattttatcaaaattaattgtattaggttctaacatatagtaaaagggtgtcaattgtttttgttgtaaaaattaattcggtttgatcat |
202 |
Q |
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| T |
29118954 |
ttaattaaattattttatcaaaattaattgtattagattctaacatatagtaaaagggtgtcaattgtttttattgtaaaaattaattcggtttgattat |
29118855 |
T |
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| Q |
203 |
tcttcaacgtcaattgtgagttctactaaacttac |
237 |
Q |
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| T |
29118854 |
tcttcatcgtcaattgtgagttctactaaacttac |
29118820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 29061229 - 29061165
Alignment:
| Q |
28 |
ctcgattacattgcgatgtcatgtaagattgatctcgatcataatgtgtcacatgttaccctatatt |
94 |
Q |
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| T |
29061229 |
ctcgatgacattgcgatgtcatgtaagattga--tccatcacaatgtgtcatgtgttaccctatatt |
29061165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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