View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10089_low_5 (Length: 344)
Name: NF10089_low_5
Description: NF10089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10089_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 52489406 - 52489070
Alignment:
| Q |
1 |
accatggaaagatatttgagataccatgtgcagggttttgagaaaacattttctgtcaagtttccagcttgctctatagctgctaagagacacataggtt |
100 |
Q |
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| T |
52489406 |
accatggaaagatatttgagataccatgtgcagggttttgagaaaacattttctgtcaaatttccagcttgctctatagctgctaagagacgcataggtt |
52489307 |
T |
|
| Q |
101 |
ccagtacaacaattttggatgttcaaggcgtggtacgtgttctgtctaaatgcatgtttagattgacattgagtatggcttaattgaagctctaaagtag |
200 |
Q |
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| T |
52489306 |
ccagtacaacaattttggatgttcaaggcgtggtacgtgttctgtctaaatgcatgtttagattgacattgagtatggcttaattgaagctctaaagtag |
52489207 |
T |
|
| Q |
201 |
cacactgtaattccgccaaattcaccgttaatccaaacatgcactaaatggctattgatagttatttgaacaccatattaactttaaaatttaaattagt |
300 |
Q |
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| T |
52489206 |
cacactgtaattccgccaaattcaccgttaatccaaacatgcactaaatggctattgaaagttatttgaacaccatattaactttaaaatttaaattagt |
52489107 |
T |
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| Q |
301 |
taggacttgagtttgtattgactatttccctttgctt |
337 |
Q |
| |
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| T |
52489106 |
taggacttgagtttgtattgactatttccctttgctt |
52489070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 54780910 - 54780833
Alignment:
| Q |
58 |
aagtttccagcttgctctatagctgctaagagacacataggttccagtacaacaattttggatgttcaaggcgtggta |
135 |
Q |
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| T |
54780910 |
aagtttcctgcttgcactattgctgcaaagaggcacatagattcaagcaccacaatcttagatgttcaaggagtggta |
54780833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 7209872 - 7209724
Alignment:
| Q |
1 |
accatggaaagatatttgagataccatgtgcagggttttgagaaaacattttctgtcaagtttccagcttgctctatagctgctaagagacacataggtt |
100 |
Q |
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||||||||||| ||||| | ||||||||| ||||||||||||||||| ||| |||| |||||||| ||||| ||||| ||||| |||||||| |||| || |
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| T |
7209872 |
accatggaaaggtatttaaaataccatgtacagggttttgagaaaacgtttgctgttaagtttcctgcttgttctattgctgcaaagagacatatagatt |
7209773 |
T |
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| Q |
101 |
ccagtacaacaattttggatgttcaaggcgtggtacgtgttctgtctaa |
149 |
Q |
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| T |
7209772 |
caagtacaaccattttggatgttcatggtgtggtaagtttactgtctaa |
7209724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 26671342 - 26671265
Alignment:
| Q |
58 |
aagtttccagcttgctctatagctgctaagagacacataggttccagtacaacaattttggatgttcaaggcgtggta |
135 |
Q |
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|||||||| |||||| | || ||| | ||||| ||||||| ||||||||| ||||| || |||||||||||||||||| |
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| T |
26671342 |
aagtttcctgcttgcacaattgcttccaagaggcacatagattccagtaccacaatcttagatgttcaaggcgtggta |
26671265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 30506271 - 30506227
Alignment:
| Q |
201 |
cacactgtaattccgccaaattcaccgttaatccaaacatgcact |
245 |
Q |
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|||||| | |||| |||||| |||||||||||||||||||||||| |
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| T |
30506271 |
cacactatgattctgccaaactcaccgttaatccaaacatgcact |
30506227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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