View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10089_low_6 (Length: 317)

Name: NF10089_low_6
Description: NF10089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10089_low_6
NF10089_low_6
[»] chr4 (44 HSPs)
chr4 (9-317)||(637755-638048)
chr4 (9-200)||(26447281-26447474)
chr4 (33-200)||(27764243-27764410)
chr4 (9-200)||(45255978-45256173)
chr4 (26-200)||(22181131-22181307)
chr4 (33-200)||(21097143-21097310)
chr4 (9-200)||(51836959-51837152)
chr4 (64-199)||(36621627-36621762)
chr4 (47-178)||(4168383-4168514)
chr4 (33-200)||(38485567-38485732)
chr4 (26-111)||(18923351-18923436)
chr4 (88-173)||(50563679-50563764)
chr4 (138-200)||(50643746-50643808)
chr4 (138-200)||(29826606-29826668)
chr4 (91-131)||(48077817-48077857)
chr4 (157-197)||(49492405-49492445)
chr4 (138-200)||(1621878-1621941)
chr4 (134-200)||(1729611-1729678)
chr4 (138-200)||(10472500-10472563)
chr4 (157-196)||(10473651-10473690)
chr4 (157-196)||(11786107-11786146)
chr4 (157-196)||(11798274-11798313)
chr4 (157-196)||(13635619-13635658)
chr4 (138-200)||(13635725-13635788)
chr4 (157-196)||(15051030-15051069)
chr4 (138-200)||(15051136-15051199)
chr4 (157-196)||(22180208-22180247)
chr4 (157-196)||(26577263-26577302)
chr4 (157-196)||(30358840-30358879)
chr4 (138-200)||(30597702-30597765)
chr4 (157-196)||(30597832-30597871)
chr4 (138-200)||(36011846-36011909)
chr4 (157-196)||(45256898-45256937)
chr4 (138-200)||(46672442-46672505)
chr4 (157-196)||(49425951-49425990)
chr4 (138-200)||(49492512-49492575)
chr4 (157-196)||(50644673-50644712)
chr4 (138-200)||(51921265-51921328)
chr4 (157-195)||(638997-639035)
chr4 (155-200)||(48077862-48077907)
chr4 (157-197)||(8157292-8157332)
chr4 (138-174)||(26578189-26578225)
chr4 (141-200)||(49426060-49426120)
chr4 (141-200)||(53441323-53441383)
[»] chr3 (37 HSPs)
chr3 (9-200)||(50754009-50754200)
chr3 (9-200)||(51362308-51362500)
chr3 (9-190)||(52987519-52987702)
chr3 (9-200)||(19385188-19385377)
chr3 (9-200)||(7045170-7045362)
chr3 (33-200)||(8718104-8718271)
chr3 (33-200)||(9069991-9070158)
chr3 (35-177)||(39099223-39099365)
chr3 (66-199)||(16277342-16277475)
chr3 (104-165)||(17627197-17627258)
chr3 (9-67)||(31852242-31852302)
chr3 (88-164)||(23699367-23699443)
chr3 (88-164)||(23717822-23717898)
chr3 (88-164)||(23736278-23736354)
chr3 (157-197)||(50755195-50755235)
chr3 (157-196)||(3475301-3475340)
chr3 (138-200)||(3475407-3475470)
chr3 (157-196)||(6097578-6097617)
chr3 (157-196)||(8719140-8719179)
chr3 (157-196)||(9071027-9071066)
chr3 (157-196)||(9106400-9106439)
chr3 (157-196)||(9595874-9595913)
chr3 (138-200)||(9595980-9596043)
chr3 (157-196)||(10986485-10986524)
chr3 (138-200)||(19284674-19284737)
chr3 (157-196)||(19284804-19284843)
chr3 (157-196)||(30947805-30947844)
chr3 (138-200)||(33414013-33414076)
chr3 (157-196)||(34562401-34562440)
chr3 (138-200)||(46237758-46237821)
chr3 (138-200)||(47335035-47335098)
chr3 (157-196)||(54379295-54379334)
chr3 (157-195)||(2941821-2941859)
chr3 (143-200)||(51846785-51846843)
chr3 (157-197)||(27446216-27446256)
chr3 (157-197)||(47924369-47924409)
chr3 (141-200)||(54379166-54379226)
[»] chr8 (28 HSPs)
chr8 (26-200)||(32987333-32987507)
chr8 (33-200)||(39021978-39022145)
chr8 (9-200)||(7058117-7058310)
chr8 (9-199)||(4836570-4836762)
chr8 (9-199)||(4842015-4842207)
chr8 (9-177)||(8550530-8550700)
chr8 (33-200)||(15260746-15260914)
chr8 (64-177)||(7614094-7614207)
chr8 (9-126)||(2750102-2750223)
chr8 (9-200)||(1208712-1208895)
chr8 (88-177)||(15181817-15181906)
chr8 (138-200)||(42433704-42433766)
chr8 (9-58)||(39658412-39658461)
chr8 (136-200)||(40012180-40012244)
chr8 (157-196)||(1149917-1149956)
chr8 (157-196)||(4835520-4835559)
chr8 (138-200)||(10237357-10237420)
chr8 (138-200)||(19784274-19784337)
chr8 (157-196)||(34633215-34633254)
chr8 (157-196)||(35301631-35301670)
chr8 (157-196)||(39657710-39657749)
chr8 (138-200)||(41099185-41099248)
chr8 (138-200)||(43690643-43690706)
chr8 (157-195)||(1209789-1209827)
chr8 (143-200)||(9852273-9852331)
chr8 (143-200)||(34648133-34648191)
chr8 (141-200)||(1150026-1150086)
chr8 (157-197)||(27506707-27506747)
[»] chr6 (19 HSPs)
chr6 (9-200)||(33346240-33346433)
chr6 (9-173)||(24737562-24737726)
chr6 (27-165)||(877246-877384)
chr6 (88-200)||(29157229-29157341)
chr6 (88-200)||(15034920-15035037)
chr6 (104-200)||(34399644-34399740)
chr6 (88-164)||(18611228-18611304)
chr6 (145-200)||(12394387-12394442)
chr6 (125-200)||(35119242-35119313)
chr6 (138-200)||(1449545-1449608)
chr6 (138-200)||(1536896-1536959)
chr6 (157-196)||(6900936-6900975)
chr6 (157-196)||(7765407-7765446)
chr6 (157-196)||(15493307-15493346)
chr6 (157-196)||(30909442-30909481)
chr6 (138-200)||(31216665-31216728)
chr6 (157-196)||(34869957-34869996)
chr6 (138-199)||(6900807-6900869)
chr6 (143-200)||(30908655-30908713)
[»] chr2 (18 HSPs)
chr2 (9-200)||(18297980-18298173)
chr2 (26-200)||(20709777-20709951)
chr2 (9-200)||(25192895-25193088)
chr2 (107-200)||(14551288-14551380)
chr2 (9-75)||(4579695-4579763)
chr2 (88-161)||(4281738-4281811)
chr2 (107-185)||(4579787-4579865)
chr2 (88-177)||(25995313-25995402)
chr2 (157-196)||(1292073-1292112)
chr2 (157-196)||(7487148-7487187)
chr2 (138-200)||(7487254-7487317)
chr2 (138-200)||(8149834-8149897)
chr2 (138-200)||(8154458-8154521)
chr2 (138-200)||(15016566-15016629)
chr2 (138-200)||(39355038-39355101)
chr2 (157-196)||(39355168-39355207)
chr2 (157-196)||(41345089-41345128)
chr2 (157-197)||(19246663-19246703)
[»] chr1 (29 HSPs)
chr1 (26-200)||(18056787-18056961)
chr1 (9-200)||(22348042-22348235)
chr1 (33-200)||(45889599-45889766)
chr1 (9-165)||(179646-179804)
chr1 (37-200)||(23319984-23320155)
chr1 (10-164)||(8402179-8402337)
chr1 (64-162)||(30802437-30802535)
chr1 (88-177)||(37639368-37639457)
chr1 (88-200)||(16115854-16115966)
chr1 (88-177)||(35198131-35198220)
chr1 (138-200)||(23921898-23921960)
chr1 (141-200)||(4097911-4097971)
chr1 (138-177)||(11421621-11421660)
chr1 (157-196)||(11422573-11422612)
chr1 (157-196)||(16976088-16976127)
chr1 (157-196)||(23817443-23817482)
chr1 (157-196)||(23920973-23921012)
chr1 (138-200)||(24635929-24635992)
chr1 (157-196)||(24636059-24636098)
chr1 (138-200)||(25889028-25889091)
chr1 (157-196)||(43452675-43452714)
chr1 (157-196)||(48762225-48762264)
chr1 (157-196)||(49936831-49936870)
chr1 (138-200)||(49936937-49937000)
chr1 (138-200)||(50351806-50351869)
chr1 (138-175)||(34369689-34369726)
chr1 (157-197)||(18618968-18619007)
chr1 (141-200)||(23175525-23175585)
chr1 (133-177)||(44260545-44260589)
[»] scaffold0097 (1 HSPs)
scaffold0097 (26-200)||(13616-13790)
[»] chr7 (38 HSPs)
chr7 (26-200)||(30428876-30429050)
chr7 (9-200)||(46573369-46573560)
chr7 (9-200)||(15974805-15974998)
chr7 (26-200)||(46024030-46024206)
chr7 (64-166)||(33797968-33798070)
chr7 (88-177)||(5757413-5757502)
chr7 (9-75)||(28396842-28396910)
chr7 (107-200)||(48690898-48690991)
chr7 (11-75)||(48305356-48305422)
chr7 (134-200)||(12279748-12279814)
chr7 (88-174)||(32090607-32090693)
chr7 (107-200)||(28396725-28396818)
chr7 (9-75)||(48691112-48691180)
chr7 (117-200)||(48305240-48305322)
chr7 (138-200)||(25778840-25778902)
chr7 (120-200)||(12279644-12279724)
chr7 (138-200)||(763700-763763)
chr7 (157-196)||(7845100-7845139)
chr7 (157-196)||(11732044-11732083)
chr7 (157-196)||(16933137-16933176)
chr7 (138-200)||(16933244-16933307)
chr7 (157-196)||(16938520-16938559)
chr7 (138-200)||(16938627-16938690)
chr7 (157-196)||(30884116-30884155)
chr7 (138-200)||(30884222-30884285)
chr7 (138-200)||(31660072-31660135)
chr7 (157-196)||(31660202-31660241)
chr7 (157-196)||(34227678-34227717)
chr7 (157-196)||(35737081-35737120)
chr7 (157-196)||(41911006-41911045)
chr7 (138-200)||(41911109-41911172)
chr7 (138-200)||(46358523-46358586)
chr7 (157-196)||(46358653-46358692)
chr7 (157-196)||(47340280-47340319)
chr7 (157-196)||(48692053-48692092)
chr7 (157-196)||(48830602-48830641)
chr7 (107-165)||(48691030-48691088)
chr7 (117-177)||(44141230-44141290)
[»] chr5 (21 HSPs)
chr5 (9-200)||(28070032-28070215)
chr5 (37-200)||(13362773-13362936)
chr5 (9-166)||(2826938-2827095)
chr5 (33-200)||(23335601-23335769)
chr5 (26-200)||(25017120-25017279)
chr5 (87-177)||(16668743-16668833)
chr5 (33-104)||(42512273-42512344)
chr5 (88-174)||(18465506-18465592)
chr5 (134-200)||(34329130-34329196)
chr5 (9-75)||(34329247-34329311)
chr5 (117-177)||(33868182-33868242)
chr5 (157-196)||(3883929-3883968)
chr5 (138-200)||(13552986-13553049)
chr5 (157-196)||(14394601-14394640)
chr5 (157-196)||(14940250-14940289)
chr5 (138-200)||(15416667-15416730)
chr5 (157-196)||(26637731-26637770)
chr5 (134-177)||(42512225-42512268)
chr5 (138-199)||(14940356-14940418)
chr5 (157-197)||(703731-703771)
chr5 (88-163)||(8948930-8949003)
[»] scaffold0238 (1 HSPs)
scaffold0238 (9-200)||(25094-25294)
[»] scaffold0194 (1 HSPs)
scaffold0194 (26-200)||(27610-27786)
[»] scaffold0544 (1 HSPs)
scaffold0544 (117-200)||(10654-10737)
[»] scaffold0337 (1 HSPs)
scaffold0337 (104-200)||(7020-7116)
[»] scaffold0189 (1 HSPs)
scaffold0189 (141-200)||(11193-11252)
[»] scaffold0571 (2 HSPs)
scaffold0571 (157-196)||(547-586)
scaffold0571 (138-200)||(676-739)
[»] scaffold0074 (1 HSPs)
scaffold0074 (157-196)||(24407-24446)
[»] scaffold0045 (1 HSPs)
scaffold0045 (138-200)||(33687-33750)
[»] scaffold0338 (1 HSPs)
scaffold0338 (157-197)||(6516-6556)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 638048 - 637755
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaga 108  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  638048 gagatgaagactcatctaaattgtagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaga 637949  T
Q  109 agcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataacttttattcaata 208  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||||||||||| ||||||               | ||||||||| |  |||||    
T  637948 agcctaaaattattacacatgtacactagatctgatggttgtgaagtgtttatgcacggtgcata---------------aacataactttcacccaata 637864  T
Q  209 cataaacatgttcaaatcattattattttgacaacaaataaaacatatatatgaaatnnnnnnntatggagcgcactttcccttaccttaacaaagcagc 308  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  637863 cataaacatgttcaaatcattatcattttgacgacaaataaaacatatatatgaaataaaaaaatatggagcgcactttcccttaccttaacaaagcagc 637764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 26447281 - 26447474
Alignment:
Q  9 gagatgaagactcatctaaattgta--gagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||| ||||||||| |||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||     
T  26447281 gagatgaggactcatctgaattgtatagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaaatttgatttggtgtaatttgt 26447380  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||| ||||||||||| ||||  |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  26447381 gaagcctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccattactttt 26447474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 27764410 - 27764243
Alignment:
Q  33 agagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaa 132  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||  |||||||||| ||||     
T  27764410 agagagagggagaactttatgttttagtgagagaaatgtttgaagcaaataaggtttgatttggtgtagtttgagaagcgtaggattattacacgtgtac 27764311  T
Q  133 tctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
     |||||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27764310 actagatctgatggttgcgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 27764243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 45256173 - 45255978
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag----ggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagttt 104  Q
    ||||||||||||||||| ||||||||||||||    || || |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  45256173 gagatgaagactcatctgaattgtagagagagagggggggagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttgatgtagttt 45256074  T
Q  105 gagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    || |||||||  |||||||||| ||||  ||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  45256073 gaaaagcctaggattattacacgtgtacactatatctgatagttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 45255978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 22181131 - 22181307
Alignment:
Q  26 aaattgtagagagag-ggagaa-ctttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattatta 123  Q
    ||||||||||||||| ||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  |||||||    
T  22181131 aaattgtagagagagaggaaaagctttatgttttagtgagagaaatgtttgaggcaaatgaagtttgatttggtgtagtttgagaaacctaggattatta 22181230  T
Q  124 cacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||| ||||  ||| |||||||||||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  22181231 cacgtgtacactaaatctgatggttgtgaagtttttatgcacggtgcataaggatttccttatgcaccataactttt 22181307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 21097310 - 21097143
Alignment:
Q  33 agagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaa 132  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |||| || ||||||||||| |||||    
T  21097310 agagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttaataagcttagaattattacacgtgtaa 21097211  T
Q  133 tctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
     |||||||| ||||||||| ||||||||| |||| |||||||||| ||||||||||||  ||||||||    
T  21097210 actagatctaatggttgtgaagtgtttatacacggtgcataaggatttccttatgcacggtaactttt 21097143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 51836959 - 51837152
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag--ggagaactttatgttttattgagagaaatgtttgaagcaaa-tgaagtttgatttggtgtagtttg 105  Q
    ||||||||||||||||| ||||||||||||||  ||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  51836959 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagtaaaatgaagtttgatttggtgtagtttg 51837058  T
Q  106 agaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||||  |||||||||| ||||   || |||||||||||||| ||| ||||||| || || ||||||| || ||||| |||||||||||||    
T  51837059 agaagcctaggattattacacgtgtacattaaatctgatggttgtgaagtatttatgctcgatg-ataaggattttcttatacaccataactttt 51837152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 36621627 - 36621762
Alignment:
Q  64 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgc 163  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||  |||||||||| ||||   ||||||||||||||||| |||||||||||    
T  36621627 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcataggattattacacgtgtacattagatctgatggttgtgaagtgtttatgc 36621726  T
Q  164 acgttgcataaggacttccttatgcaccataacttt 199  Q
    ||| |||||||||| |||||||||||||||||||||    
T  36621727 acggtgcataaggatttccttatgcaccataacttt 36621762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 4168514 - 4168383
Alignment:
Q  47 ctttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatgg 146  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||  |||||||||  ||||  |||||||||||||    
T  4168514 ctttatgttttagtgagagaaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaaacctaggattattacatgtgtacactagatctgatgg 4168415  T
Q  147 ttgtggagtgtttatgcacgttgcataaggac 178  Q
    ||||| |||||||||||||| |||||||||||    
T  4168414 ttgtgaagtgtttatgcacggtgcataaggac 4168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 38485567 - 38485732
Alignment:
Q  33 agagagagggagaactttatgttttat--tgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgt 130  Q
    ||||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||  |||| |||||||||||||  |||||||||| |||    
T  38485567 agagagagggagatctttatgttttttagtgagagaaatgtttgaagcaaatgaagtttgatttaatgtattttgagaagcctaggattattacacgtgt 38485666  T
Q  131 aatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |   ||||||||||||||||| || ||||||||||| |||||||    ||||||||||||||||||||||    
T  38485667 acattagatctgatggttgtgaagcgtttatgcacggtgcataa----ttccttatgcaccataactttt 38485732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 18923436 - 18923351
Alignment:
Q  26 aaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagc 111  Q
    |||||||||||||||||| |  ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  18923436 aaattgtagagagagggatagttttatgttttagtgacagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagc 18923351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 50563679 - 50563764
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcata 173  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||  |||||||||||||||||| |||||||||||| | ||||||    
T  50563679 ttgatttggtgtagtttgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcata 50563764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 50643808 - 50643746
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  50643808 atctgatggttatgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 50643746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 29826606 - 29826668
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||||||||| |||| ||||||||| |||||||||| ||||||||| ||||||||||||    
T  29826606 atctgatggttgtgaagtgcttatgcacggtgcataaggatttccttatgtaccataactttt 29826668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 48077817 - 48077857
Alignment:
Q  91 atttggtgtagtttgagaagcctaaaattattacacatgta 131  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  48077817 atttggtgtagtttgagaagcctaggattattacacatgta 48077857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 49492445 - 49492405
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataact 197  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  49492445 tttatgcacggtgcataaggatttccttatgcaccataact 49492405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 1621941 - 1621878
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  1621941 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataactttt 1621878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 1729611 - 1729678
Alignment:
Q  134 ctagatctgatggttgtggagtgtttatgcacgttgcat-aaggacttccttatgcaccataactttt 200  Q
    |||||||||||||||||| |||||||||||||| || || ||| | |  |||||||||||||||||||    
T  1729611 ctagatctgatggttgtgaagtgtttatgcacggtgtataaagaaatgacttatgcaccataactttt 1729678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 10472563 - 10472500
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    |||||||||||||| | |||||||||||| ||||||||| | |  |||||||||||||||||||    
T  10472563 atctgatggttgtgaaatgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 10472500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 10473651 - 10473690
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  10473651 tttatgcacggtgcataaggatttccttatgcaccataac 10473690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 11786107 - 11786146
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  11786107 tttatgcacggtgcataaggatttccttatgcaccataac 11786146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 11798274 - 11798313
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  11798274 tttatgcacggtgcataaggatttccttatgcaccataac 11798313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 13635658 - 13635619
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  13635658 tttatgcacggtgcataaggatttccttatgcaccataac 13635619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 13635725 - 13635788
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  13635725 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 13635788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 15051069 - 15051030
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  15051069 tttatgcacggtgcataaggatttccttatgcaccataac 15051030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 15051136 - 15051199
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  15051136 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 15051199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 22180247 - 22180208
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  22180247 tttatgcacggtgcataaggatttccttatgcaccataac 22180208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 26577302 - 26577263
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  26577302 tttatgcacggtgcataaggatttccttatgcaccataac 26577263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 30358840 - 30358879
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  30358840 tttatgcacggtgcataaggatttccttatgcaccataac 30358879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 30597765 - 30597702
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  30597765 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 30597702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 30597832 - 30597871
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  30597832 tttatgcacggtgcataaggatttccttatgcaccataac 30597871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 36011909 - 36011846
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  36011909 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 36011846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 45256898 - 45256937
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  45256898 tttatgcacggtgcataaggatttccttatgcaccataac 45256937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 46672505 - 46672442
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  46672505 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 46672442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 49425990 - 49425951
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  49425990 tttatgcacggtgcataaggatttccttatgcaccataac 49425951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 49492512 - 49492575
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  49492512 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 49492575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 50644673 - 50644712
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  50644673 tttatgcacggtgcataaggatttccttatgcaccataac 50644712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 51921265 - 51921328
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  51921265 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 51921328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 638997 - 639035
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataa 195  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  638997 tttatgcacggtgcataaggatttccttatgcaccataa 639035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 48077862 - 48077907
Alignment:
Q  155 tgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||||||| |||||||||| |||||||||||  |||||||||    
T  48077862 tgtttatgcacggtgcataaggatttccttatgcatgataactttt 48077907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 8157292 - 8157332
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataact 197  Q
    |||||||| | |||||||||| |||||||||||||||||||    
T  8157292 tttatgcagggtgcataaggatttccttatgcaccataact 8157332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 26578189 - 26578225
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataa 174  Q
    |||||||||||||| |||||||||||||| |||||||    
T  26578189 atctgatggttgtgaagtgtttatgcacgatgcataa 26578225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 49426060 - 49426120
Alignment:
Q  141 tgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    |||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  49426060 tgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 49426120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 53441383 - 53441323
Alignment:
Q  141 tgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    |||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  53441383 tgatggttgtgatgtgtttatgcacgatgcataaggaaataacttatgcaccataactttt 53441323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 50754200 - 50754009
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaga 108  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  50754200 gagattaagactcatctgaattgtagagagagggagagctttatgttttagtgagagaagtgtttgaatcaaatgaagtttgatttggtgtagtttgaga 50754101  T
Q  109 agcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||  |||||||||| ||||  |||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  50754100 agcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgtaccataactttt 50754009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 51362308 - 51362500
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaac-tttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgag 107  Q
    ||||||||||||||||| |||||||||||||| | |||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51362308 gagatgaagactcatctgaattgtagagagagagggaaagtttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgag 51362407  T
Q  108 aagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||  |||||||||| ||||  ||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  51362408 aagcctaggattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 51362500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 52987519 - 52987702
Alignment:
Q  9 gagatgaagactcatctaaattgtagag--agagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||| ||||||||||  ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  52987519 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttga 52987618  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcac 190  Q
    ||||||||  |||||||||| ||||  |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  52987619 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcac 52987702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 19385188 - 19385377
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaga 108  Q
    ||||||||||||||||| ||||||||||  |||||||  ||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||    
T  19385188 gagatgaagactcatctgaattgtagag--agggagagttttatgttttagtgagggaaatgattgaagcaaatgaagtttgatttgatgtagtttgaga 19385285  T
Q  109 agcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||| ||||||||||| ||||  ||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  19385286 agcctagaattattacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 19385377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 7045170 - 7045362
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag--ggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||| ||||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |||    
T  7045170 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaat-aagtttgatttgatgtagtctga 7045268  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||  |||||||||| ||||  |||||||||||||||||| ||||||||| |||| |||||||| | ||||||||||||||||||||||    
T  7045269 gaagcctacgattattacacgtgtacactagatctgatggttgtgaagtgtttatacacggtgcataagaatttccttatgcaccataactttt 7045362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 8718271 - 8718104
Alignment:
Q  33 agagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaa 132  Q
    ||||||||||| | |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||||||||  |||||||||||||||     
T  8718271 agagagagggaaagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtac 8718172  T
Q  133 tctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
     |||||||||||||||||| ||| |||||| ||| |||||||||| ||||||||||||||||||||||    
T  8718171 actagatctgatggttgtgaagtatttatgtacggtgcataaggatttccttatgcaccataactttt 8718104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 9070158 - 9069991
Alignment:
Q  33 agagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaa 132  Q
    ||||||||||| | |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||||||||  |||||||||||||||     
T  9070158 agagagagggaaagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacatgtac 9070059  T
Q  133 tctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
     |||||||||||||||||| ||| |||||| ||| |||||||||| ||||||||||||||||||||||    
T  9070058 actagatctgatggttgtgaagtatttatgtacggtgcataaggatttccttatgcaccataactttt 9069991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 39099365 - 39099223
Alignment:
Q  35 agagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaatc 134  Q
    ||||||||||| |||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||  |||||||||| ||||  |    
T  39099365 agagagggagagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttagtgtagtttgagaagcctaggattattacacgtgtacac 39099266  T
Q  135 tagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    ||||||||||||||||| | | |||||||||| ||||||||||    
T  39099265 tagatctgatggttgtgaaatatttatgcacggtgcataagga 39099223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 16277342 - 16277475
Alignment:
Q  66 aaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcac 165  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||  |||||||||| ||||  |||||| ||||||||||| |||||||||||||    
T  16277342 aaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcac 16277441  T
Q  166 gttgcataaggacttccttatgcaccataacttt 199  Q
    | ||||||| || |||||||||||||||||||||    
T  16277442 ggtgcataaagatttccttatgcaccataacttt 16277475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 17627197 - 17627258
Alignment:
Q  104 tgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcac 165  Q
    |||||| |||| ||||||||||| ||||  |||||||||||||||||| |||||||||||||    
T  17627197 tgagaaacctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcac 17627258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 31852302 - 31852242
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag--ggagaactttatgttttattgagagaa 67  Q
    ||||||||||||||||| || |||||||||||  |||||||||||||||||| ||||||||    
T  31852302 gagatgaagactcatctgaactgtagagagagagggagaactttatgttttagtgagagaa 31852242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 23699443 - 23699367
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgca 164  Q
    |||||||| |||||||||| |||||||  |||||||||| ||||   ||||| ||||||||||| ||||||||||||    
T  23699443 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgca 23699367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 23717898 - 23717822
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgca 164  Q
    |||||||| |||||||||| |||||||  |||||||||| ||||   ||||| ||||||||||| ||||||||||||    
T  23717898 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgca 23717822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 23736354 - 23736278
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgca 164  Q
    |||||||| |||||||||| |||||||  |||||||||| ||||   ||||| ||||||||||| ||||||||||||    
T  23736354 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgca 23736278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 50755195 - 50755235
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataact 197  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  50755195 tttatgcacggtgcataaggatttccttatgcaccataact 50755235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 3475340 - 3475301
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  3475340 tttatgcacggtgcataaggatttccttatgcaccataac 3475301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 3475407 - 3475470
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  3475407 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 3475470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 6097617 - 6097578
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  6097617 tttatgcacggtgcataaggatttccttatgcaccataac 6097578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 8719140 - 8719179
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  8719140 tttatgcacggtgcataaggatttccttatgcaccataac 8719179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 9071027 - 9071066
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  9071027 tttatgcacggtgcataaggatttccttatgcaccataac 9071066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 9106400 - 9106439
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  9106400 tttatgcacggtgcataaggatttccttatgcaccataac 9106439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 9595913 - 9595874
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  9595913 tttatgcacggtgcataaggatttccttatgcaccataac 9595874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 9595980 - 9596043
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  9595980 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatagcttatgcaccataactttt 9596043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 10986485 - 10986524
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  10986485 tttatgcacggtgcataaggatttccttatgcaccataac 10986524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 19284737 - 19284674
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  19284737 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 19284674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 19284804 - 19284843
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  19284804 tttatgcacggtgcataaggatttccttatgcaccataac 19284843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 30947844 - 30947805
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  30947844 tttatgcacggtgcataaggatttccttatgcaccataac 30947805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 33414013 - 33414076
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  33414013 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 33414076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 34562440 - 34562401
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  34562440 tttatgcacggtgcataaggatttccttatgcaccataac 34562401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 46237758 - 46237821
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  46237758 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 46237821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 47335098 - 47335035
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  47335098 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 47335035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 54379295 - 54379334
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  54379295 tttatgcacggtgcataaggatttccttatgcaccataac 54379334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 2941859 - 2941821
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataa 195  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  2941859 tttatgcacggtgcataaggatttccttatgcaccataa 2941821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 51846785 - 51846843
Alignment:
Q  143 atggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||| |||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  51846785 atggttgtgaagtgtttatgcacggtgcataaggaaatggcttatgcaccataactttt 51846843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 27446216 - 27446256
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataact 197  Q
    |||||||| | |||||||||| |||||||||||||||||||    
T  27446216 tttatgcaaggtgcataaggatttccttatgcaccataact 27446256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 47924369 - 47924409
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataact 197  Q
    |||||||| | |||||||||| |||||||||||||||||||    
T  47924369 tttatgcagggtgcataaggatttccttatgcaccataact 47924409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 54379226 - 54379166
Alignment:
Q  141 tgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    |||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  54379226 tgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 54379166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 32987333 - 32987507
Alignment:
Q  26 aaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattaca 125  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  32987333 aaattgtagagagagggagagctttatgttttagttagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattaca 32987432  T
Q  126 catgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    | ||||  |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  32987433 cgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 32987507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 39022145 - 39021978
Alignment:
Q  33 agagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaa 132  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||     
T  39022145 agagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacatgtac 39022046  T
Q  133 tctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
     |||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  39022045 actagatctgatgattgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 39021978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 7058310 - 7058117
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag--ggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||| ||||||||||||||  ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  7058310 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaagtgtttgaagcaaatgaagtttgatttggtgtagtttga 7058211  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||| |||  |||||||||| ||||  ||||||| |||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||    
T  7058210 gaagtctaggattattacacgtgtacactagatcggatggttgtgaagtgtttatgcacggtgcataagtatttccttatgcaccataactttt 7058117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 4836570 - 4836762
Alignment:
Q  9 gagatgaagactcatctaaattgtagag--agagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||| ||||||||||  ||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  4836570 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttga 4836669  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataacttt 199  Q
     |||| ||  |||||||||| ||||  |||||||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||||||    
T  4836670 aaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagcatttctttatgcaccataacttt 4836762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 4842015 - 4842207
Alignment:
Q  9 gagatgaagactcatctaaattgtagag--agagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||| ||||||||||  ||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  4842015 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttga 4842114  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataacttt 199  Q
     |||| ||  |||||||||| ||||  |||||||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||||||    
T  4842115 aaagcttaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagcatttctttatgcaccataacttt 4842207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 8550700 - 8550530
Alignment:
Q  9 gagatgaagactcatctaaattgtagaga--gagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  8550700 gagatgaagactcatctgaattgtagagaaagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttga 8550601  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    ||||| ||  |||||||||| ||||  |||||||||||||||||| |||||||||||||| ||||||||||    
T  8550600 gaagcttatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagga 8550530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 15260746 - 15260914
Alignment:
Q  33 agagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaa 132  Q
    |||||||||||||  ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||| || ||||     
T  15260746 agagagagggagagttttatattttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagccttggattattaaacgtgtac 15260845  T
Q  133 tctagatctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
     |||||| ||||||||||| |||||||||||||| ||||||||| |  |||||||||||||||||||||    
T  15260846 actagatttgatggttgtgaagtgtttatgcacggtgcataaggaaaatccttatgcaccataactttt 15260914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 7614207 - 7614094
Alignment:
Q  64 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgc 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||   ||||||||||||||||| |||||||||||    
T  7614207 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctatgattattacacgtgtacattagatctgatggttgtgaagtgtttatgc 7614108  T
Q  164 acgttgcataagga 177  Q
    | | ||||||||||    
T  7614107 atggtgcataagga 7614094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 2750223 - 2750102
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag----ggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagttt 104  Q
    ||||||||||||||||| ||||||||||||||    ||||| | |||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||    
T  2750223 gagatgaagactcatctgaattgtagagagagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagttt 2750124  T
Q  105 gagaagcctaaaattattacac 126  Q
    |||||| |||  ||||||||||    
T  2750123 gagaagtctatgattattacac 2750102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 1208895 - 1208712
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaga 108  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||   | | | ||    |||  ||  || |   ||    
T  1208895 gagatgaagactcatctgaattgtagagagagggagagctttatgttttagtgagagaaatgtttgagagagagggag---aatt--gtagagat---ga 1208804  T
Q  109 agcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||  |||||||||| ||||  |||||||| ||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  1208803 agcctaggattattacacgtgtacactagatcttatggttgtaaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 1208712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 15181906 - 15181817
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||  |||||||||||| ||||| |||||||||||| | ||||||||||    
T  15181906 ttgatttggtgtagtttgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgtttatgcagggtgcataagga 15181817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 42433766 - 42433704
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  42433766 atctgatggttgtgaagtgcttatgcacggtgcataaggatttccttatgcaccataactttt 42433704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 39658412 - 39658461
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaactttatgtttta 58  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  39658412 gagatgaagactcatttgaattgtagagagagggagagctttatgtttta 39658461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 40012180 - 40012244
Alignment:
Q  136 agatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||| |||||||||  ||| |||||||| | ||||||||||  |||||||||||||||||||||    
T  40012180 agatccgatggttgtaaagtctttatgcatggtgcataaggaaatccttatgcaccataactttt 40012244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 1149956 - 1149917
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  1149956 tttatgcacggtgcataaggatttccttatgcaccataac 1149917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 4835559 - 4835520
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  4835559 tttatgcacggtgcataaggatttccttatgcaccataac 4835520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 10237420 - 10237357
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  10237420 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 10237357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 19784337 - 19784274
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  19784337 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataactttt 19784274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 34633254 - 34633215
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  34633254 tttatgcacggtgcataaggatttccttatgcaccataac 34633215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 35301670 - 35301631
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  35301670 tttatgcacggtgcataaggatttccttatgcaccataac 35301631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 39657749 - 39657710
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  39657749 tttatgcacggtgcataaggatttccttatgcaccataac 39657710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 41099248 - 41099185
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  41099248 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 41099185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 43690706 - 43690643
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  43690706 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 43690643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 1209789 - 1209827
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataa 195  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  1209789 tttatgcacggtgcataaggatttccttatgcaccataa 1209827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 9852331 - 9852273
Alignment:
Q  143 atggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||| |||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  9852331 atggttgtgaagtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 9852273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 34648133 - 34648191
Alignment:
Q  143 atggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||| |||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  34648133 atggttgtgaagtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 34648191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 1150026 - 1150086
Alignment:
Q  141 tgatggttgtggagtgtttatgcacgttgcataa-ggacttccttatgcaccataactttt 200  Q
    |||||||||||  ||||||||||||| ||||||| ||| |  |||||||||||||||||||    
T  1150026 tgatggttgtgatgtgtttatgcacggtgcataagggaataacttatgcaccataactttt 1150086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 27506747 - 27506707
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataact 197  Q
    |||||||| | |||||||||| |||||||||||||||||||    
T  27506747 tttatgcagggtgcataaggatttccttatgcaccataact 27506707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 33346240 - 33346433
Alignment:
Q  9 gagatgaagactcatctaaattgtagag--agagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||  |||||||||    
T  33346240 gagatgaagactcatctgaattgtagagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaacgaagtttgatttgacgtagtttga 33346339  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||| ||||||||||| ||||  |||||| ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  33346340 gaagcctataattattacacgtgtacactagatttgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 33346433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 24737562 - 24737726
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaga 108  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24737562 gagatgaagactcatctgaattgtagagagagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttaaga 24737661  T
Q  109 agcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcata 173  Q
    ||||||  |||||||||| ||||  |||||||||||||||||| |||||||||||||| ||||||    
T  24737662 agcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcata 24737726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 877384 - 877246
Alignment:
Q  27 aattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacac 126  Q
    ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||    
T  877384 aattgtagagagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattatac 877285  T
Q  127 atgtaatctagatctgatggttgtggagtgtttatgcac 165  Q
     ||||  |  ||||| ||||||||| |||||||||||||    
T  877284 gtgtacacctgatctaatggttgtgaagtgtttatgcac 877246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 29157341 - 29157229
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatg 187  Q
    |||||||||||||||||||||||||||  |||||||||| ||||  |||||||||||||||||  |||||||||||||| |||||||||| |||||| ||    
T  29157341 ttgatttggtgtagtttgagaagcctagtattattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtgcataaggatttccttgtg 29157242  T
Q  188 caccataactttt 200  Q
    ||  |||||||||    
T  29157241 catgataactttt 29157229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 15034920 - 15035037
Alignment:
Q  88 ttgatttggtgtagtttgaga-----agcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttcc 182  Q
    |||||||||||||||||||||     ||||||  |||||||||||||||  |||||||||||||||||| |   |||||||||| |||||||||| ||||    
T  15034920 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatgcacggtgcataaggatttcc 15035019  T
Q  183 ttatgcaccataactttt 200  Q
    ||||||||||||||||||    
T  15035020 ttatgcaccataactttt 15035037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 34399740 - 34399644
Alignment:
Q  104 tgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||||||  |||||||||| ||||  |||||||||||| ||||| |||||||||  ||| |||||||||| ||||||||||||||||||||||    
T  34399740 tgagaagcctaggattattacacgtgtacactagatctgatgattgtgaagtgtttatatacggtgcataaggatttccttatgcaccataactttt 34399644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 18611304 - 18611228
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgca 164  Q
    |||||||||||| ||||||||||||||  |||||||||| ||||  |||||||||||||||||| ||||||||||||    
T  18611304 ttgatttggtgtggtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgca 18611228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 12394387 - 12394442
Alignment:
Q  145 ggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  12394387 ggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 12394442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 35119313 - 35119242
Alignment:
Q  125 acatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||  |||||||||||||||||| |||||||||||||| ||||||||||    |||||||||||||||||||    
T  35119313 acatgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagga----cttatgcaccataactttt 35119242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 1449608 - 1449545
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  1449608 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataactttt 1449545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 1536896 - 1536959
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  1536896 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 1536959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 6900936 - 6900975
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  6900936 tttatgcacggtgcataaggatttccttatgcaccataac 6900975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 7765407 - 7765446
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  7765407 tttatgcacggtgcataaggatttccttatgcaccataac 7765446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 15493307 - 15493346
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  15493307 tttatgcacggtgcataaggatttccttatgcaccataac 15493346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 30909442 - 30909481
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  30909442 tttatgcacggtgcataaggaattccttatgcaccataac 30909481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 31216728 - 31216665
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  31216728 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 31216665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 34869996 - 34869957
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  34869996 tttatgcacggtgcataaggatttccttatgcaccataac 34869957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 6900869 - 6900807
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataacttt 199  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  ||||||||||||||||||    
T  6900869 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 6900807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 30908713 - 30908655
Alignment:
Q  143 atggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||| |||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  30908713 atggttgtgaagtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 30908655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 18297980 - 18298173
Alignment:
Q  9 gagatgaagactcatctaaattgtagag--agagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||||||||||||||  |||||||||  ||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||    
T  18297980 gagatgaagactcatctaaattgtagagagagagggagagatttatgttttagtgagagaaacgcttgaagcaaatgaagtttgatttggtgtagtttga 18298079  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||  |||||||||| ||||  |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  18298080 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 18298173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 20709951 - 20709777
Alignment:
Q  26 aaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattaca 125  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  20709951 aaattgtagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattaca 20709852  T
Q  126 catgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
      ||||  |||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||    
T  20709851 tgtgtacactagatctgatggttgtgaagtgtttatgcacggtggataaggatttccttatgcaccataactttt 20709777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 25193088 - 25192895
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag--ggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||| | | ||||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  25193088 gagatgaagactcgtatgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttga 25192989  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||| ||||||||||| ||||  |||||||| ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  25192988 gaagcctagaattattacacgtgtacactagatctaatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 25192895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 14551288 - 14551380
Alignment:
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||  |||||||||||||||  |||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||    
T  14551288 gaagcctaggattattacacatgtacactagatctgatggttgtgaagtgtttatgcacg-tgcataagaatttccttatgcaccataactttt 14551380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 4579695 - 4579763
Alignment:
Q  9 gagatgaagactcatctaaattgtagag--agagggagaactttatgttttattgagagaaatgtttga 75  Q
    ||||||||||||||||| ||||||||||  ||||||||| |||||||||||| ||||||||||||||||    
T  4579695 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttga 4579763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 4281738 - 4281811
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttat 161  Q
    |||||||| ||||||||||||| ||||  |||||||||| ||||  |||||||||||||||||| |||||||||    
T  4281738 ttgatttgctgtagtttgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 4281811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 4579787 - 4579865
Alignment:
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttcctta 185  Q
    ||||| ||| |||||||||| ||||  |||||||||||||||||  |||||||||||| | |||||||||| |||||||    
T  4579787 gaagcataagattattacacgtgtacactagatctgatggttgtaaagtgtttatgcatggtgcataaggatttcctta 4579865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 25995402 - 25995313
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    ||||||||||||| |||||| ||||||  |||||||||| ||||  ||| |||||||||||||| ||| ||||||||   ||||||||||    
T  25995402 ttgatttggtgtaatttgagtagcctaggattattacacgtgtacactaaatctgatggttgtgaagtatttatgcagagtgcataagga 25995313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 1292112 - 1292073
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  1292112 tttatgcacggtgcataaggatttccttatgcaccataac 1292073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 7487187 - 7487148
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  7487187 tttatgcacggtgcataaggatttccttatgcaccataac 7487148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 7487254 - 7487317
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  7487254 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatagcttatgcaccataactttt 7487317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 8149897 - 8149834
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  8149897 atctgatggttgtgatgtgtttatgcacgatgcataaggaaatggcttatgcaccataactttt 8149834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 8154521 - 8154458
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  8154521 atctgatggttgtgatgtgtttatgcacgatgcataaggaaatggcttatgcaccataactttt 8154458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 15016566 - 15016629
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  15016566 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 15016629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 39355101 - 39355038
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  39355101 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 39355038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 39355168 - 39355207
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  39355168 tttatgcacggtgcataaggatttccttatgcaccataac 39355207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 41345128 - 41345089
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  41345128 tttatgcacggtgcataaggatttccttatgcaccataac 41345089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 19246703 - 19246663
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataact 197  Q
    |||||||| | |||||||||| |||||||||||||||||||    
T  19246703 tttatgcagggtgcataaggatttccttatgcaccataact 19246663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 18056961 - 18056787
Alignment:
Q  26 aaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattaca 125  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  18056961 aaattgtagagagagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattaca 18056862  T
Q  126 catgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    | ||||  |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  18056861 cgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 18056787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 22348235 - 22348042
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag--ggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||| | ||||||||||||||  ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22348235 gagatgaagactcatatgaattgtagagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 22348136  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||  |||||||||| ||||  |||||| ||||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||    
T  22348135 gaagcctaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcgcggtgcataaggatttccttatgcaccataactttt 22348042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 45889766 - 45889599
Alignment:
Q  33 agagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaa 132  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||     
T  45889766 agagagagggagaactttatgttttagtgagagaaatgtttgaaggaaatgaaatttgatttggtgtagtttgagaagcctaagattattacacatgtat 45889667  T
Q  133 tctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
     |||||||||||||||||  | |||||||||||| || ||||| | |||||||||||||||| |||||    
T  45889666 actagatctgatggttgtaaaatgtttatgcacggtggataagaatttccttatgcaccatacctttt 45889599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 179804 - 179646
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag--ggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||| ||||||||||||||  ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  179804 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatgttttaagcaaatgaagtttgatttggtgtagtttga 179705  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcac 165  Q
    ||||| |   |||||||||| ||||  |||||||||||||||||| |||||||||||||    
T  179704 gaagcttgggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcac 179646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 23319984 - 23320155
Alignment:
Q  37 agagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaatcta 136  Q
    ||||||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||  |||    
T  23319984 agagggatagctttatgttttagtgagagaaatgtttaaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacacta 23320083  T
Q  137 gatctgatggttgtggagtgtttatgcacgtt--------gcataaggacttccttatgcaccataactttt 200  Q
    ||||||||||||||| |||||||||||| | |        ||||||||| ||||||||||||||||||||||    
T  23320084 gatctgatggttgtgaagtgtttatgcatgatacctaagagcataaggatttccttatgcaccataactttt 23320155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 164
Target Start/End: Original strand, 8402179 - 8402337
Alignment:
Q  10 agatgaagactcatctaaattgtagagagagggagaa----ctttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttg 105  Q
    |||||||||||||||| |||||||||||||| ||||     |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||    
T  8402179 agatgaagactcatctgaattgtagagagagagagagagagctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtttagtttg 8402278  T
Q  106 agaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgca 164  Q
    |||| ||||  |||||||||  ||||  ||||||||||||||| || ||||||||||||    
T  8402279 agaaacctaggattattacatgtgtacactagatctgatggttatgaagtgtttatgca 8402337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 30802535 - 30802437
Alignment:
Q  64 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatg 162  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||||||||| | ||||||||    
T  30802535 agaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaagattattacacgtgtacactagatctgatggttgtgaaatgtttatg 30802437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 37639457 - 37639368
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||  |||||||||||||||||| |||||||||||| | ||||||||||    
T  37639457 ttgatttggtgtagtttgagaagtctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcataagga 37639368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 16115966 - 16115854
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatg 187  Q
    ||||||||||||||||| ||||| ||   |||||||||| ||||   ||||| ||||||||||| |||||||||||||| |||||||||| |||||||||    
T  16115966 ttgatttggtgtagtttaagaagtcttggattattacacgtgtacattagatttgatggttgtgaagtgtttatgcacggtgcataaggatttccttatg 16115867  T
Q  188 caccataactttt 200  Q
    ||  |||||||||    
T  16115866 catgataactttt 16115854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 35198131 - 35198220
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    ||||||| ||||||||||| ||| |||  |||||||||| ||||  ||||||||||||| |||| |||||||||||| | ||||||||||    
T  35198131 ttgattttgtgtagtttgaaaagtctaggattattacacgtgtacactagatctgatggctgtgaagtgtttatgcagggtgcataagga 35198220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 23921898 - 23921960
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||||| || |||| ||||||||| |||||||||| |||||||||||| |||||||||    
T  23921898 atctgatggttatgaagtgcttatgcacgatgcataaggatttccttatgcacaataactttt 23921960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 4097911 - 4097971
Alignment:
Q  141 tgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||| |||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  4097911 tgatggttgtgaagtgtttatgcacggtgcataaggaaatagcttatgcaccataactttt 4097971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 11421660 - 11421621
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  11421660 atctgatggttgtgaagtgtttatgcacggtgcataagga 11421621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 11422573 - 11422612
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  11422573 tttatgcacgatgcataaggatttccttatgcaccataac 11422612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 16976088 - 16976127
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  16976088 tttatgcacggtgcataaggatttccttatgcaccataac 16976127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 23817443 - 23817482
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  23817443 tttatgcacggtgcataaggatttccttatgcaccataac 23817482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 23921012 - 23920973
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  23921012 tttatgcacgatgcataaggatttccttatgcaccataac 23920973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 24635992 - 24635929
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  24635992 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 24635929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 24636059 - 24636098
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  24636059 tttatgcacggtgcataaggatttccttatgcaccataac 24636098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 25889028 - 25889091
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  25889028 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatagcttatgcaccataactttt 25889091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 43452675 - 43452714
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  43452675 tttatgcacggtgcataaggatttccttatgcaccataac 43452714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 48762264 - 48762225
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  48762264 tttatgcacggtgcataaggatttccttatgcaccataac 48762225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 49936870 - 49936831
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  49936870 tttatgcacggtgcataaggatttccttatgcaccataac 49936831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 49936937 - 49937000
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  49936937 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 49937000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 50351869 - 50351806
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  50351869 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 50351806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 34369726 - 34369689
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataag 175  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  34369726 atctgatggttgtgaagtgtttatgcacggtgcataag 34369689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 18618968 - 18619007
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataact 197  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  18618968 tttatgcacggtgcataagga-ttccttatgcaccataact 18619007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 23175525 - 23175585
Alignment:
Q  141 tgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||| ||||||||||||||  |||||||| | |  |||||||||||||||||||    
T  23175525 tgatggttgtgaagtgtttatgcacggcgcataaggaaatggcttatgcaccataactttt 23175585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 44260589 - 44260545
Alignment:
Q  133 tctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    |||| |||||||||||||| |||||||||||| | ||||||||||    
T  44260589 tctaaatctgatggttgtgaagtgtttatgcagggtgcataagga 44260545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 13790 - 13616
Alignment:
Q  26 aaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattaca 125  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  13790 aaattgtagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattaca 13691  T
Q  126 catgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
      ||||  |||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||    
T  13690 tgtgtacactagatctgatggttgtgaagtgtttatgcacggtggataaggatttccttatgcaccataactttt 13616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 30429050 - 30428876
Alignment:
Q  26 aaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattaca 125  Q
    ||||||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  30429050 aaattgtagagagagggggagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattaca 30428951  T
Q  126 catgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    | ||||  |||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||    
T  30428950 cgtgtacactagatctgatggttgtgaaatgtttatgcacggtgcataaggatttccttatgcaccataactttt 30428876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 46573369 - 46573560
Alignment:
Q  9 gagatgaagactcatctaaattgtaga--gagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||| |||||||||  |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46573369 gagatgaagactcatctgaattgtagatagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 46573468  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||  |||||||||| ||||  |||||||||||||||||| |||||||||  ||| |||||||| |   ||||||||| ||||||||||    
T  46573469 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatatacggtgcataagaa--accttatgcatcataactttt 46573560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 15974805 - 15974998
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaa--ctttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 106  Q
    ||||||||||||||||| | ||||| |||||||||||   |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||    
T  15974805 gagatgaagactcatctgacttgtacagagagggagagagctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtgtactttga 15974904  T
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
     |||||||| |||||||||  ||||  ||| || ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  15974905 taagcctaagattattacatgtgtacactaaatatgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 15974998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 46024206 - 46024030
Alignment:
Q  26 aaattgtagaga--gagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattatta 123  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||  |||||||||||||| |||  |||||||    
T  46024206 aaattgtagagatagagggagaactttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttaatgtagtttgagaagtctaggattatta 46024107  T
Q  124 cacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||| ||||  ||| |||||||||||||| |||||||||||||| |||||||||| || ||| |||||||||||||||    
T  46024106 cacgtgtacactatatctgatggttgtgaagtgtttatgcacggtgcataaggattttcttgtgcaccataactttt 46024030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 33798070 - 33797968
Alignment:
Q  64 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgc 163  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||  |||||||||| ||||  |||||||||||||||||| | |||||||||    
T  33798070 agaaatgtttgaagcaaatgaagtttgatttgatgtagtttgagaagtctaggattattacacgtgtatactagatctgatggttgtgaaatgtttatgc 33797971  T
Q  164 acg 166  Q
    |||    
T  33797970 acg 33797968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 5757502 - 5757413
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    ||||||||||||||||||||||| |||  |||||||||| ||||  |||||||||||||||||| |||||||||||||| ||||||||||    
T  5757502 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagga 5757413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 28396910 - 28396842
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag--ggagaactttatgttttattgagagaaatgtttga 75  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  28396910 gagatgaagactcatctgaattgcagagagagagggagaactttatgttttattgagagaaatgtttga 28396842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 48690991 - 48690898
Alignment:
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||  |||||||||| ||||  |||||| ||||||||||| | |||||||||||| |||||||||| ||| ||||||||||||||||||    
T  48690991 gaagcctatgattattacacgtgtacactagatttgatggttgtgaactgtttatgcacggtgcataaggatttctttatgcaccataactttt 48690898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 48305422 - 48305356
Alignment:
Q  11 gatgaagactcatctaaattgtagagagag--ggagaactttatgttttattgagagaaatgtttga 75  Q
    ||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  48305422 gatgaagactcatctgaattgtagagagagagggagagctttatgttttattgagagaaatgtttga 48305356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 12279814 - 12279748
Alignment:
Q  134 ctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||| ||||||||| ||| |||||||||| ||||||| || ||||||||||||||||||||||    
T  12279814 ctagatctaatggttgtgaagtctttatgcacggtgcataaagatttccttatgcaccataactttt 12279748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 32090693 - 32090607
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataa 174  Q
    |||||||||||||||||||||||||||  |||||||||| ||||  |||||| |||||||| || | |||||||||| | |||||||    
T  32090693 ttgatttggtgtagtttgagaagcctatgattattacacgtgtatactagatttgatggttctgaattgtttatgcagggtgcataa 32090607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 28396818 - 28396725
Alignment:
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||  |||||||| | ||||  |||||||||||| ||||| | |||||||||||| |||||||||| ||||||||||| | ||||||||    
T  28396818 gaagcctaggattattactcttgtacactagatctgatgattgtgaaatgtttatgcacggtgcataaggatttccttatgcatcgtaactttt 28396725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 48691180 - 48691112
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagag--ggagaactttatgttttattgagagaaatgtttga 75  Q
    ||||||||||||||||| ||||||||||||||  ||||| |||||||||||| |||||||||| |||||    
T  48691180 gagatgaagactcatctgaattgtagagagagagggagagctttatgttttagtgagagaaatttttga 48691112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 48305322 - 48305240
Alignment:
Q  117 attattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||| || ||||  ||||||| |||| ||||  |||||||||||||| ||||||||||  |||||||||||||||||||||    
T  48305322 attattatacgtgtacactagatccgatgtttgtaaagtgtttatgcacggtgcataagga-atccttatgcaccataactttt 48305240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 25778902 - 25778840
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||||||||| |||| ||||||||  |||||||| | || |||||||||||||||||||    
T  25778902 atctgatggttgtgaagtgcttatgcacagtgcataagaattttcttatgcaccataactttt 25778840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 12279724 - 12279644
Alignment:
Q  120 attacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||| ||||  || ||||| ||||||||| ||| ||||| |||| ||||||| || ||||||||| ||||||||||||    
T  12279724 attacacgtgtacactggatctaatggttgtgaagtctttatacacggtgcataatgatttccttatgtaccataactttt 12279644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 763763 - 763700
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  763763 atctgatggttgtgacgtgtttatgcacggtgcataaggaaatggcttatgcaccataactttt 763700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 7845100 - 7845139
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  7845100 tttatgcaggttgcataaggatttccttatgcaccataac 7845139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 11732083 - 11732044
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  11732083 tttatgcacggtgcataaggatttccttatgcaccataac 11732044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 16933176 - 16933137
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  16933176 tttatgcacggtgcataaggatttccttatgcaccataac 16933137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 16933244 - 16933307
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  16933244 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 16933307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 16938559 - 16938520
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  16938559 tttatgcacggtgcataaggatttccttatgcaccataac 16938520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 16938627 - 16938690
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  16938627 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactttt 16938690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 30884155 - 30884116
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  30884155 tttatgcacggtgcataaggatttccttatgcaccataac 30884116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 30884222 - 30884285
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  30884222 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 30884285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 31660135 - 31660072
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  31660135 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 31660072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 31660202 - 31660241
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  31660202 tttatgcacggtgcataaggatttccttatgcaccataac 31660241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 34227717 - 34227678
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  34227717 tttatgcaggttgcataaggatttccttatgcaccataac 34227678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 35737081 - 35737120
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  35737081 tttatgcacggtgcataaggatttccttatgcaccataac 35737120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 41911045 - 41911006
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  41911045 tttatgcacggtgcataaggatttccttatgcaccataac 41911006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 41911109 - 41911172
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  41911109 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 41911172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 46358586 - 46358523
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  46358586 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 46358523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 46358653 - 46358692
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  46358653 tttatgcacggtgcataaggatttccttatgcaccataac 46358692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 47340280 - 47340319
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  47340280 tttatgcacggtgcataaggatttccttatgcaccataac 47340319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 48692053 - 48692092
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  48692053 tttatgcacggtgcataaggatttccttatgcaccataac 48692092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 48830602 - 48830641
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  48830602 tttatgcacggtgcataaggatttccttatgcaccataac 48830641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 48691088 - 48691030
Alignment:
Q  107 gaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcac 165  Q
    ||||||||  |||||||||| ||||  |||||||||||||||||| ||||| |||||||    
T  48691088 gaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtctatgcac 48691030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 44141230 - 44141290
Alignment:
Q  117 attattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    |||||||||| ||||  ||| ||| |||||||||| |||||||||||| | ||||||||||    
T  44141230 attattacacgtgtacactaaatcagatggttgtgaagtgtttatgcagggtgcataagga 44141290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 28070032 - 28070215
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaga 108  Q
    ||||||||||||||||| ||||||||||||        |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28070032 gagatgaagactcatctgaattgtagagag--------ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaga 28070123  T
Q  109 agcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    || |||  |||||||||| ||||  ||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  28070124 agtctaggattattacacgtgtacactagatctgatagttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 28070215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 13362936 - 13362773
Alignment:
Q  37 agagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtaatcta 136  Q
    ||||||| | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||| | ||  |||    
T  13362936 agagggaaagctttatgttttagtgagagaaatgtttgaagcaaatgaattttgatttggtgtagtttgagaagcctatgattattacacgtatacacta 13362837  T
Q  137 gatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  13362836 gatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 13362773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 2826938 - 2827095
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgaga 108  Q
    ||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  2826938 gagatgaagactcatttgaattgtagagagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgaga 2827037  T
Q  109 agcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacg 166  Q
    ||||||| || ||||||| ||||  |||||||||||||||||  ||||||||||||||    
T  2827038 agcctaagataattacacgtgtacactagatctgatggttgtaaagtgtttatgcacg 2827095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 23335601 - 23335769
Alignment:
Q  33 agagagagggagaactttatgtttt-attgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgta 131  Q
    ||||||||||||| ||||||||||| | |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||  |||||||||| ||||    
T  23335601 agagagagggagagctttatgtttttagtgagagaaatgtttgatgcaaatgaactttgatttggtgtagtttgagaagcctatgattattacacgtgta 23335700  T
Q  132 atctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
      |||||||||||||||||| | |||||||||||| |||||| ||| ||||||||||||||||||||||    
T  23335701 cactagatctgatggttgtgaaatgtttatgcacggtgcatacggatttccttatgcaccataactttt 23335769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 25017120 - 25017279
Alignment:
Q  26 aaattgtagagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattaca 125  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||               ||| |||||||||||||||    
T  25017120 aaattgtagagagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttga---------------gaaacctaaaattattaca 25017204  T
Q  126 catgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    | ||||  |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  25017205 cgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataactttt 25017279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 16668743 - 16668833
Alignment:
Q  87 tttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||  |||||||||||||||||| |||||||||||| | ||||||||||    
T  16668743 tttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcataagga 16668833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 42512344 - 42512273
Alignment:
Q  33 agagagagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagttt 104  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  42512344 agagagagggagagctttaggttttagtgagagaaatgtttgaagtaaatgaagtttgatttggtgtagttt 42512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 18465506 - 18465592
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataa 174  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||  |||||||||||||||||| |||||||||||| | |||||||    
T  18465506 ttgatttggtgtagtttgagaagtctaagattattacacgtgtacactagatctgatggttgtgaagtgtttatgcaggatgcataa 18465592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 34329196 - 34329130
Alignment:
Q  134 ctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||    
T  34329196 ctagatctgatggttgtgaagtgtttatgcacggtgcataaagatttccttatgcaccataactttt 34329130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 34329311 - 34329247
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaactttatgttttattgagagaaatgtttga 75  Q
    ||||||||||| ||||| |||||||||||||| |||  |||||||||||| ||||||||||||||||    
T  34329311 gagatgaagacccatctgaattgtagagagagagag--ctttatgttttagtgagagaaatgtttga 34329247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 33868242 - 33868182
Alignment:
Q  117 attattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    ||||||||||||||||  || ||| |||||||||| |||||||||||| | ||||||||||    
T  33868242 attattacacatgtaaaataaatcagatggttgtgaagtgtttatgcagggtgcataagga 33868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 3883968 - 3883929
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  3883968 tttatgcacggtgcataaggatttccttatgcaccataac 3883929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 13553049 - 13552986
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  13553049 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 13552986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 14394601 - 14394640
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  14394601 tttatgcacggtgcataaggatttccttatgcaccataac 14394640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 14940289 - 14940250
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  14940289 tttatgcacggtgcataaggatttccttatgcaccataac 14940250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 15416730 - 15416667
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  15416730 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttt 15416667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 26637770 - 26637731
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  26637770 tttatgcacggtgcataaggatttccttatgcaccataac 26637731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 42512268 - 42512225
Alignment:
Q  134 ctagatctgatggttgtggagtgtttatgcacgttgcataagga 177  Q
    |||||||||||||||||| |||||||||||||| || |||||||    
T  42512268 ctagatctgatggttgtgaagtgtttatgcacggtggataagga 42512225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 14940356 - 14940418
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataacttt 199  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  ||||||||||||||||||    
T  14940356 atctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 14940418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 703771 - 703731
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataact 197  Q
    |||||||| | |||||||||| |||||||||||||||||||    
T  703771 tttatgcaggatgcataaggatttccttatgcaccataact 703731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 8949003 - 8948930
Alignment:
Q  88 ttgatttggtgtagtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgc 163  Q
    |||||||||||||||||||||||||||  |||||  ||| ||||  ||| ||||||| ||| || |||||||||||    
T  8949003 ttgatttggtgtagtttgagaagcctaggattat--cacgtgtacactaaatctgatagttttgaagtgtttatgc 8948930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 25094 - 25294
Alignment:
Q  9 gagatgaagactcatctaaattgtagagagagggagaactttatgt---------tttattgagagaaatgtttgaagcaaatgaagtttgatttggtgt 99  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||||         |||| ||||||||||||||||||||||||||||||||||||||||    
T  25094 gagatgaagactcatctgaattgtagagagagggaaagctttatgtctttatgtttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgt 25193  T
Q  100 agtttgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataacttt 199  Q
    |||||||||| ||||| ||||| |||| ||||  ||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||    
T  25194 agtttgagaaacctaagattatgacacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataaggatttccttatgcaccataacttt 25293  T
Q  200 t 200  Q
    |    
T  25294 t 25294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 27786 - 27610
Alignment:
Q  26 aaattgtagaga--gagggagaactttatgttttattgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattatta 123  Q
    ||||||||||||  ||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27786 aaattgtagagaaagagggagagatttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctagaattatta 27687  T
Q  124 cacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||| ||||  |||||||| || |||||| |||||||||||||| | ||||||   ||||||||||||||||||||||    
T  27686 cacgtgtacactagatcttatagttgtgaagtgtttatgcacggtacataagtttttccttatgcaccataactttt 27610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 10654 - 10737
Alignment:
Q  117 attattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||| ||| |  |||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||    
T  10654 attattacatatgcacactagatctgatggttgtgaagtgtttatgcacggtgtataaggatttccttatgcaccataactttt 10737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 7116 - 7020
Alignment:
Q  104 tgagaagcctaaaattattacacatgtaatctagatctgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    |||||| ||||  |||||||||  ||||  |||||||||||||||||| |||||||||||||| || |||| || ||| ||||||||||||||||||    
T  7116 tgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaagatttcgttatgcaccataactttt 7020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 11193 - 11252
Alignment:
Q  141 tgatggttgtggagtgtttatgcacgttgcataaggacttccttatgcaccataactttt 200  Q
    ||||||||||| |||| ||||||||  |||||||||| ||||||||||||||||||||||    
T  11193 tgatggttgtgaagtgcttatgcacagtgcataaggatttccttatgcaccataactttt 11252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 586 - 547
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  586 tttatgcacggtgcataaggatttccttatgcaccataac 547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 676 - 739
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  676 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataactttt 739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 24407 - 24446
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataac 196  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  24407 tttatgcacggtgcataaggatttccttatgcaccataac 24446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 33750 - 33687
Alignment:
Q  138 atctgatggttgtggagtgtttatgcacgttgcataagg-acttccttatgcaccataactttt 200  Q
    ||||||||||||||  ||||||||||||| ||||||||| | |  |||||||||||||||||||    
T  33750 atctgatggttgtgatgtgtttatgcacggtgcataaggaaatggcttatgcaccataactttt 33687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 6516 - 6556
Alignment:
Q  157 tttatgcacgttgcataaggacttccttatgcaccataact 197  Q
    |||||||| | |||||||||| |||||||||||||||||||    
T  6516 tttatgcatggtgcataaggatttccttatgcaccataact 6556  T

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