View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1008_low_1 (Length: 383)
Name: NF1008_low_1
Description: NF1008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1008_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 49545496 - 49545114
Alignment:
| Q |
1 |
agaatgttcagtagcacctcacactccttaacaaggttgttaagcacatcagtttcgaaaaagggctggttcagaacctcttggataaacggcaagcgaa |
100 |
Q |
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| T |
49545496 |
agaatgttcagtagcacctcacactccttaacaaggttgttaagcacatcagtttcgaaaaagggctggttcagaacctcttggataaacggcaagcgaa |
49545397 |
T |
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| Q |
101 |
gtagtccaccagttcgcttatcgtgtttctttattatcttcactaaacctgcataaacattcatgatatataatctaataaatttctcttttcaaatgaa |
200 |
Q |
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| T |
49545396 |
gtagtccaccagttcgcttatcgtgtttctttattatcttcactaaacctgcataaacattcatgatatataatctaataaatttctcttttcaaatgaa |
49545297 |
T |
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| Q |
201 |
ttaaaaacacatacaagtcaacatttacattattcatgaatatatgactatatcagatcttagattagaatttagatcatgcctgtgtagttaagtgcac |
300 |
Q |
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| T |
49545296 |
ttaaaaacacacacaagtcaacagttacattattcatgaatatataactatatcagatcttagattagaatttagatcatgcctgtgtagttaagtgcac |
49545197 |
T |
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| Q |
301 |
tatagttctccaacaaaaccatctccccatggaagtcaactatttccctccataatgacgtcaactccacatctgaataatcc |
383 |
Q |
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| T |
49545196 |
tatagttctccaacaaaaccatctccccatggaagtcaactatttccctccataatgacatcaactccaaatctgaataatcc |
49545114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 2469028 - 2469166
Alignment:
| Q |
15 |
cacctcacactccttaacaaggttgttaagcacatcagtttcgaaaaagggctggttcagaacctcttggataaacggcaagcgaagtagtccaccagtt |
114 |
Q |
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| T |
2469028 |
cacctcacactccttcacaagcttgttaagcacatcgattttgaagaatggctggttcaagacatcttggataaaaggtaaccgaagtagtgcaccagtt |
2469127 |
T |
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| Q |
115 |
cgcttatcgtgtttctttattatcttcactaaacctgca |
153 |
Q |
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| T |
2469128 |
cgcttatcatatttctttattatcttaaccaaacctgca |
2469166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 351
Target Start/End: Original strand, 2469838 - 2469907
Alignment:
| Q |
282 |
cctgtgtagttaagtgcactatagttctccaacaaaaccatctccccatggaagtcaactatttccctcc |
351 |
Q |
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| T |
2469838 |
cctgtgtagttaagtgcactatagttctctaacaaaaccatctctccatgaaaatccactatttccctcc |
2469907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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