View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10090_low_1 (Length: 482)
Name: NF10090_low_1
Description: NF10090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10090_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 17783494 - 17783382
Alignment:
| Q |
211 |
gcaaattttattaataaaagtctatgcacaagacgaccagggacgggtaagacagaaactacaagcaacggacgtcgtatataagtggaacctcaaaagg |
310 |
Q |
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| T |
17783494 |
gcaaattttattaataaaagtccatgcacaagacgaccagggacgggtaagacagaaactacaagcaacggacgtcgtacataagtggaacctcaaaaga |
17783395 |
T |
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| Q |
311 |
aaatgcatacacc |
323 |
Q |
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| T |
17783394 |
aaatgcatacacc |
17783382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 405 - 464
Target Start/End: Complemental strand, 17783300 - 17783241
Alignment:
| Q |
405 |
tagcaaatagtaaattagataaaaatccagttactttatttagcagcataaggagaataa |
464 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17783300 |
tagcaaatagtaaattacataaaaatccagttactttatttagcagcataaggagaataa |
17783241 |
T |
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