View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10091_high_3 (Length: 346)

Name: NF10091_high_3
Description: NF10091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10091_high_3
NF10091_high_3
[»] chr2 (1 HSPs)
chr2 (9-283)||(40709182-40709445)
[»] chr6 (3 HSPs)
chr6 (87-312)||(34249311-34249536)
chr6 (87-301)||(1094355-1094573)
chr6 (183-304)||(1090696-1090817)
[»] chr1 (2 HSPs)
chr1 (87-311)||(5716843-5717064)
chr1 (87-301)||(29360204-29360417)
[»] scaffold0009 (1 HSPs)
scaffold0009 (87-308)||(3137-3361)
[»] chr5 (3 HSPs)
chr5 (87-308)||(39777360-39777578)
chr5 (138-308)||(32743570-32743740)
chr5 (110-306)||(16098321-16098520)
[»] chr8 (8 HSPs)
chr8 (87-300)||(5861132-5861345)
chr8 (92-311)||(9229196-9229414)
chr8 (127-311)||(25358372-25358553)
chr8 (175-311)||(25391403-25391538)
chr8 (175-311)||(25678027-25678162)
chr8 (88-165)||(25129713-25129790)
chr8 (87-141)||(44300589-44300643)
chr8 (175-311)||(25617281-25617407)
[»] scaffold0466 (1 HSPs)
scaffold0466 (86-311)||(8205-8424)
[»] chr3 (2 HSPs)
chr3 (82-300)||(25079916-25080133)
chr3 (203-266)||(27049158-27049221)
[»] chr4 (1 HSPs)
chr4 (166-307)||(18982251-18982390)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 40709445 - 40709182
Alignment:
Q  9 agcacagactataaccacagcaccgaaacatgtagtaaaataatctatagaggttgtaactgcacaatcaacacaatctgttggaaatattaagagtaaa 108  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40709445 agcacaggctataaccacaacaccgaaacatgtagtaaaataatctatagaggttgtaactgcacaatcaacacaatctgttggaaatattaagagtaaa 40709346  T
Q  109 ttagaatttggatagttaggaaagaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaatttccgatggatctccggtgcaac 208  Q
    ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||           |||||||||||    
T  40709345 ttaaaatttggatggttaggaaagaaagaagagagttttgttatgccgtggccaaaatcactgccctgaaagtaaatt-----------tccggtgcaac 40709257  T
Q  209 ccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacgatg 283  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  40709256 ccaatatccggttttgctccccaaagtttacattactgcatgtctgaacccatgcactcgaggccaaacacgatg 40709182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 312
Target Start/End: Complemental strand, 34249536 - 34249311
Alignment:
Q  87 tgttggaaatattaagagtaaattagaatttggatagttaggaaagaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaatt 186  Q
    |||||||||||||||||| ||| |||||||  || ||||||||| || |||  |||||||||||||||||||| ||||| |||||| ||||||| |||||    
T  34249536 tgttggaaatattaagagaaaactagaattgagagagttaggaatgatagagaagagttttgttgtgccgtggtcaaaaccattgctctgaaagaaaatt 34249437  T
Q  187 tccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacgatggag 286  Q
    | || |||| |||| ||||||| || ||||| ||||||||||||||  ||||||| ||||| ||||||||| | ||||||||||  ||||||||||||||    
T  34249436 ttcggtggacctccagtgcaactcattatccagttttgctccccaagatttacataactgcatgtctgaactcgtgcactcgagatcaaacacgatggag 34249337  T
Q  287 cttcacaaacaatgcccaaaataata 312  Q
    ||||| ||||||||||||||||||||    
T  34249336 cttcataaacaatgcccaaaataata 34249311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 87 - 301
Target Start/End: Original strand, 1094355 - 1094573
Alignment:
Q  87 tgttggaaatattaagagtaaattagaat-----ttggatagttaggaaagaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagt 181  Q
    |||||||||||||||||||||| || |||     ||| |||| ||||||||| |||||||||||  ||||||||||| | ||| ||| || ||||||||     
T  1094355 tgttggaaatattaagagtaaaatataatagattttgaatagataggaaagatagaagagagtt--gttgtgccgtgacaaaagtcactgtcctgaaagc 1094452  T
Q  182 aaatttccgatggatctccgg-tgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggac-aaacac 279  Q
    |||||| || ||||||||||| |||||||||| |||||||||||||||| || |||||||  ||||||||| ||||| | ||||||||||| |  |||||    
T  1094453 aaattttcggtggatctccgggtgcaacccaa-atccggttttgctccctaaggtttacacaactgcgtgtgtgaactcgtgcactcgaggcctgaacac 1094551  T
Q  280 gatggagcttcacaaacaatgc 301  Q
    ||||||||||||||||||||||    
T  1094552 gatggagcttcacaaacaatgc 1094573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 304
Target Start/End: Original strand, 1090696 - 1090817
Alignment:
Q  183 aatttccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggaca-aacacga 281  Q
    ||||| ||||||| || | ||||||||||| |||||||||| ||||||||  ||||||  ||| ||||||||||| |   ||||||||| |  |||||||    
T  1090696 aattttcgatggaccttcagtgcaacccaa-atccggttttactccccaagatttacacaactacgtgtctgaactcggacactcgaggcctgaacacga 1090794  T
Q  282 tggagcttcacaaacaatgccca 304  Q
     |||| |||||||||||||||||    
T  1090795 cggagtttcacaaacaatgccca 1090817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 87 - 311
Target Start/End: Complemental strand, 5717064 - 5716843
Alignment:
Q  87 tgttggaaatattaagagtaaattagaatttggatagttaggaaagaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaatt 186  Q
    |||||||||||||||||||||| |||||||| || |||||||||||| |||||||||||  ||||||||||||  |||| || ||||||||| | |||||    
T  5717064 tgttggaaatattaagagtaaactagaatttagagagttaggaaagatagaagagagtt--gttgtgccgtggtaaaaaccactgccctgaatgcaaatt 5716967  T
Q  187 tccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacgatggag 286  Q
    |||| || |  |||||||||||||||  |||| |||||||||||||| ||||||  ||||||||||| ||| ||| ||||||| | |||| |||||||||    
T  5716966 tccggtgtacttccggtgcaacccaag-tccgattttgctccccaaaatttacacaactgcgtgtctaaactcatccactcgaagtcaaaaacgatggag 5716868  T
Q  287 cttcacaaacaatgcccaaaataat 311  Q
    ||||||||| |||||||| ||||||    
T  5716867 cttcacaaataatgcccataataat 5716843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 87 - 301
Target Start/End: Complemental strand, 29360417 - 29360204
Alignment:
Q  87 tgttggaaatattaagagtaaattagaatttg-gatagttaggaaa-gaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaa 184  Q
    |||||||| |||||||||| || ||||||||| || |||||||||| || | |||||| ||  ||||||||  | | ||| ||| |||| |||||| |||    
T  29360417 tgttggaattattaagagtgaactagaatttgagagagttaggaaaagatataagagaatt--gttgtgccc-gacaaaagtcactgccttgaaagcaaa 29360321  T
Q  185 tttccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacgatgg 284  Q
    ||| || |||| |||||||||||||||||||||| ||||||||| ||| |||||||  ||||||||||||||  | |||||| |||| ||||||||||||    
T  29360320 ttttcggtggacctccggtgcaacccaatatccgattttgctcctcaaggtttacacaactgcgtgtctgaattcgtgcacttgaggccaaacacgatgg 29360221  T
Q  285 agcttcacaaacaatgc 301  Q
    ||||||| |||||||||    
T  29360220 agcttcataaacaatgc 29360204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 87 - 308
Target Start/End: Original strand, 3137 - 3361
Alignment:
Q  87 tgttggaaatattaagagtaaattagaatttggata---gttaggaaagaa-agaagagagttttgttgtgccgtggccaaaatcattgccctgaaagta 182  Q
    |||| ||||||||||||| |||| ||||||||||||   |||| ||||||| ||||||||||||||||||||||||||||||| | || ||||||||| |    
T  3137 tgtttgaaatattaagaggaaat-agaatttggatattggttatgaaagaatagaagagagttttgttgtgccgtggccaaaacctttaccctgaaagca 3235  T
Q  183 aatttccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacgat 282  Q
    |||||  | || | |||||||||||  ||||||||| |||| |||| ||| ||||| |  | | ||||||||||||| ||||||||||| ||||||||||    
T  3236 aatttttggtgaaactccggtgcaattcaatatccgattttactcctcaaggtttatacaatttcgtgtctgaacccgtgcactcgaggtcaaacacgat 3335  T
Q  283 ggagcttcacaaacaatgcccaaaat 308  Q
    ||||||||||||| |||| |||||||    
T  3336 ggagcttcacaaataatgtccaaaat 3361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 87 - 308
Target Start/End: Complemental strand, 39777578 - 39777360
Alignment:
Q  87 tgttggaaatattaagagtaaattagaatttggatagttaggaaagaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaatt 186  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||| ||  |||||||| || | |||| ||||||| ||| ||  ||||    
T  39777578 tgttggaaatattaagag-aaattagattttggatagctaggaaagatagaagagaatt--gttgtgccatgacaaaaaccattgccttgagagcgaatt 39777482  T
Q  187 tccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggac-aaacacgatgga 285  Q
    | || |||| ||||||| |||||||  |||||||||||||||||||||||||||  ||||||||| |||||| |||||||||||| |  |||||||||||    
T  39777481 ttcggtggacctccggtacaacccag-atccggttttgctccccaaagtttacacaactgcgtgtttgaacctatgcactcgaggtctgaacacgatgga 39777383  T
Q  286 gcttcacaaacaatgcccaaaat 308  Q
    ||||||  |||||||||||||||    
T  39777382 gcttcaataacaatgcccaaaat 39777360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 138 - 308
Target Start/End: Original strand, 32743570 - 32743740
Alignment:
Q  138 agagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaatttccgatggatctccggtgcaacccaatatccggttttgctccccaaagttt 237  Q
    |||||||||  ||||| |||||||||||  | | ||||||||| ||||||||| |||| ||||| ||||| | ||| ||| | |||||||||||| ||||    
T  32743570 agagagtttaattgtgtcgtggccaaaactactaccctgaaagcaaatttccggtggacctccgatgcaatctaatttcctgatttgctccccaaggttt 32743669  T
Q  238 acattactgcgtgtctgaacccatgcactcgaggacaaacacgatggagcttcacaaacaatgcccaaaat 308  Q
    |||  ||||| ||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  32743670 acacaactgcttgtctgaactcatgcacttgaggccaaacacgatggagcttcacaaacaatacccaaaat 32743740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 306
Target Start/End: Original strand, 16098321 - 16098520
Alignment:
Q  110 tagaatttggatagttaggaaagaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaatttccgatggatctccggtgcaacc 209  Q
    |||| |||||||||| ||||||   || |||||| ||| ||||||||||||||||| || | ||||||||| ||| ||||| ||||||||| ||||||      
T  16098321 tagattttggatagtaaggaaaattaggagagagatttattgtgccgtggccaaaaccactaccctgaaagcaaaattccggtggatctccagtgcaatt 16098420  T
Q  210 caatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacgatgg----agcttcacaaacaatgcccaa 305  Q
    ||||| ||||||||||||  |||||||||||  ||| ||||| ||||| | | ||||||||| | |||||| |||    |||||||||||||||||||||    
T  16098421 caataaccggttttgctcttcaaagtttacacaactacgtgtgtgaactcgttcactcgagg-ccaacacgttggagctagcttcacaaacaatgcccaa 16098519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 87 - 300
Target Start/End: Complemental strand, 5861345 - 5861132
Alignment:
Q  87 tgttggaaatattaagagtaaattagaatttggatagttaggaaagaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaatt 186  Q
    ||||||||| ||||| ||||||||||||||||||||||||| || || |||| |||||||||||||||||||| |||||  | ||| ||||||| |||||    
T  5861345 tgttggaaacattaaaagtaaattagaatttggatagttagaaatgatagaaaagagttttgttgtgccgtggtcaaaactactgctctgaaagcaaatt 5861246  T
Q  187 tccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacgatggag 286  Q
    | || |||| ||  | ||||||  |||||||| ||||||| | |||| ||||||  |||| ||||||||||| |||||||||| | |||| |  ||||||    
T  5861245 ttcggtggacctttgatgcaacttaatatccgattttgcttctcaaaatttacacaactgtgtgtctgaaccaatgcactcgacgccaaatataatggag 5861146  T
Q  287 cttcacaaacaatg 300  Q
    ||||||||| ||||    
T  5861145 cttcacaaataatg 5861132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 92 - 311
Target Start/End: Original strand, 9229196 - 9229414
Alignment:
Q  92 gaaatattaagagtaaattagaatttggatagttaggaaa-gaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaatttccg 190  Q
    |||||||||||||| || |||||||  || |||||||||| || |||||||| ||  |||||||||||||||||| || | | ||||||| |||||| ||    
T  9229196 gaaatattaagagtgaactagaattgagagagttaggaaaagatagaagagaatt--gttgtgccgtggccaaaaccactactctgaaagaaaattttcg 9229293  T
Q  191 atggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacgatggagcttc 290  Q
    || || ||| | ||||||||||||||||||||||||| |||| |||||||  | ||| ||||||||| | ||||||  ||| ||||||| ||||||||||    
T  9229294 atagacctcagatgcaacccaatatccggttttgctctccaaggtttacacaattgcatgtctgaactcgtgcacttaagggcaaacacaatggagcttc 9229393  T
Q  291 acaaacaatgcccaaaataat 311  Q
    |||||||||| ||| ||||||    
T  9229394 acaaacaatgtccagaataat 9229414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 311
Target Start/End: Complemental strand, 25358553 - 25358372
Alignment:
Q  127 ggaaagaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaatttccgatggatctccggtgcaacccaatatccggttttgct 226  Q
    ||||||| ||||||||| |  ||||||||||||  ||| ||| ||   |||||| |||||| || |||| ||||||||||| ||||||||||||||||||    
T  25358553 ggaaagatagaagagagat--gttgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgct 25358456  T
Q  227 ccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacgatggagcttcacaaacaatgcccaaaataat 311  Q
    |||||| |||||||  |||  || ||||||| | ||||||||| ||| | |||  |||||||||| |||||||||||||||||||    
T  25358455 ccccaaggtttacacaactatgtatctgaactcgtgcactcga-gaccagcactttggagcttcataaacaatgcccaaaataat 25358372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 25391538 - 25391403
Alignment:
Q  175 tgaaagtaaatttccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggaca 274  Q
    |||||| |||||| || |||| ||||||||||| |||||||||||||||||||||||| |||||||  |||  || ||||||| | ||||||||||| |     
T  25391538 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaactcgtgcactcgagg-cc 25391440  T
Q  275 aacacgatggagcttcacaaacaatgcccaaaataat 311  Q
    | |||  |||||||||| |||||||||||||||||||    
T  25391439 agcactttggagcttcataaacaatgcccaaaataat 25391403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 25678162 - 25678027
Alignment:
Q  175 tgaaagtaaatttccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggaca 274  Q
    |||||| |||||| || |||| ||||||||||| ||||||||||||||||||  |||| |||||||  ||| ||| ||||||| | ||||||||||| |     
T  25678162 tgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctttccaaggtttacacaactacgtatctgaactcgtgcactcgagg-cc 25678064  T
Q  275 aacacgatggagcttcacaaacaatgcccaaaataat 311  Q
    | || | ||||||||||||||||||||||||||||||    
T  25678063 agcatgttggagcttcacaaacaatgcccaaaataat 25678027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 25129790 - 25129713
Alignment:
Q  88 gttggaaatattaagagtaaattagaatttggatagttaggaaagaaagaagagagttttgttgtgccgtggccaaaa 165  Q
    ||||||||||||||||||||| |||||||  |||||||||||||||  |||||||||| ||||||||||||| |||||    
T  25129790 gttggaaatattaagagtaaaatagaattgagatagttaggaaagatcgaagagagttatgttgtgccgtggacaaaa 25129713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 44300643 - 44300589
Alignment:
Q  87 tgttggaaatattaagagtaaattagaatttggatagttaggaaagaaagaagag 141  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||| |||||||    
T  44300643 tgttggaaatattaagagtaaaatagaattgagatagttaggaaagatagaagag 44300589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 25617407 - 25617281
Alignment:
Q  175 tgaaagtaaatttccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggaca 274  Q
    |||||| ||||||||| |||| ||||||||||| |||||||| | |||||||| | ||||||||||  ||| |||         | ||||||||||| |     
T  25617407 tgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgt---------cgtgcactcgagg-ct 25617318  T
Q  275 aacacgatggagcttcacaaacaatgcccaaaataat 311  Q
    |||||| |||||||||||||||||||||||| |||||    
T  25617317 aacacgttggagcttcacaaacaatgcccaacataat 25617281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 311
Target Start/End: Original strand, 8205 - 8424
Alignment:
Q  86 ctgttggaaatattaagagtaaattagaatttggatagttaggaaagaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagtaaat 185  Q
    |||||||||||||||| || ||||   | || |||||| || |||||| |||||||||||  |||| |||||||| |||   | |||| |||||| ||||    
T  8205 ctgttggaaatattaataggaaat---agttcggatagatacgaaagatagaagagagtt--gttgcgccgtggcaaaagcaactgccatgaaagcaaat 8299  T
Q  186 ttccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacgatgga 285  Q
    |||| ||||| ||| |||||||   |||||||||||||||||||||| |||||||  ||| ||||||||||| | |||||| |||| | | |||| ||||    
T  8300 ttccaatggacctctggtgcaatttaatatccggttttgctccccaatgtttacacaactacgtgtctgaactcgtgcacttgagg-ctagcacgttgga 8398  T
Q  286 gcttcacaaacaatgcccaaaataat 311  Q
    |||||||||||||| |||||||||||    
T  8399 gcttcacaaacaatacccaaaataat 8424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 300
Target Start/End: Original strand, 25079916 - 25080133
Alignment:
Q  82 caatctgttggaaatattaagagtaaattagaatttggatagttaggaaagaaagaagagagttttgttgtgccgtggccaaaatcattgccctgaaagt 181  Q
    |||| ||||||||||||||  | |||| |||||||  ||||||||||||  | | ||||||  |||||||||| ||||| |||  || ||| |||||||     
T  25079916 caatgtgttggaaatattacaattaaaatagaattgagatagttaggaataataaaagaga--tttgttgtgcagtggcaaaagccactgctctgaaagc 25080013  T
Q  182 aaatttccgatggatctccggtgcaacccaatatcc-ggttttgctccccaaagtttacattactgcgtgtctgaacccatgcactcgaggacaaacacg 280  Q
    ||||||||| |||| |||||||||||||||||| || |||||| ||||  || |||||||  | || |||||||||| | ||||||||||   ||| ||     
T  25080014 aaatttccgctggacctccggtgcaacccaatacccgggtttttctccgtaaggtttacacaattgtgtgtctgaactcgtgcactcgagacaaaataca 25080113  T
Q  281 atggagcttcacaaacaatg 300  Q
    | ||||||||||||||||||    
T  25080114 agggagcttcacaaacaatg 25080133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 27049221 - 27049158
Alignment:
Q  203 tgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcact 266  Q
    ||||||| |||||| |||||||||| ||||||||||||  ||| ||||| | ||||||||||||    
T  27049221 tgcaacctaatatctggttttgctctccaaagtttacacaactacgtgttttaacccatgcact 27049158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 18982251 - 18982390
Alignment:
Q  166 tcattgccctgaaagtaaatttccgatggatctccggtgcaacccaatatccggttttgctccccaaagtttacattactgcgtgtctgaacccatgcac 265  Q
    ||||||| || |||| |||||| |||| || ||||| |  || || |||| || ||||||||| ||||| |||| | |||  |||||||| ||| |||||    
T  18982251 tcattgcactaaaagcaaattttcgatagacctccgatataatcccatattcgattttgctcctcaaaggttacgtaactatgtgtctga-cccgtgcac 18982349  T
Q  266 tcgaggacaaacacgatggagcttcacaaacaatgcccaaaa 307  Q
    |||||| ||| |||  |||||||||||||||||| |||||||    
T  18982350 tcgaggtcaa-cacattggagcttcacaaacaatacccaaaa 18982390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University