View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10091_high_4 (Length: 346)
Name: NF10091_high_4
Description: NF10091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10091_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 34334593 - 34334270
Alignment:
| Q |
11 |
cacagacctgcaggtttgaaattatacgataaacctttaccggaactaaaccacgttaagttttgttgtgttgattcgagtttgatctaagttcnnnnnn |
110 |
Q |
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| T |
34334593 |
cacagacctgcaggtttgaaattatacgataaacctttaccggaactaaaccactttaagttttgttgtgttgattcgagtttgatctaagttcaaaaaa |
34334494 |
T |
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| Q |
111 |
ntctgaacctaacacttcaaactggattgagttgagtatttagattaattgagttgacttgtacagtaaacacctagaattaaaggcatcatataactgc |
210 |
Q |
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| T |
34334493 |
atctgaacctaacacttcaaactggattgagttgagtatttagattaattgagttgacttgtacagtaaacacctagaattgaaggtatcatataactgc |
34334394 |
T |
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| Q |
211 |
taaatgaaaatttcataca---agcaatgcttaaatttagcaagatgcaaagaaacatttgtttgagttagagcctattagcaacatcatatcaaacaat |
307 |
Q |
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||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34334393 |
taaatgaaaatttcatacaaacaacaatgcttaattttagcaagatgcaaagaaacatttgtttgagttagagcctattagcaacatcatatcaaacaat |
34334294 |
T |
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| Q |
308 |
actcggattaagagaggcatattg |
331 |
Q |
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|||||||||||||||||||||||| |
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| T |
34334293 |
actcggattaagagaggcatattg |
34334270 |
T |
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