View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10091_high_6 (Length: 253)

Name: NF10091_high_6
Description: NF10091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10091_high_6
NF10091_high_6
[»] chr3 (4 HSPs)
chr3 (4-204)||(27687000-27687198)
chr3 (172-210)||(49570233-49570271)
chr3 (196-225)||(10267754-10267783)
chr3 (177-225)||(45254242-45254290)
[»] chr6 (3 HSPs)
chr6 (187-225)||(29457192-29457230)
chr6 (177-225)||(30639428-30639476)
chr6 (177-225)||(135172-135220)
[»] scaffold0161 (1 HSPs)
scaffold0161 (181-225)||(26709-26753)
[»] chr8 (5 HSPs)
chr8 (181-225)||(1230667-1230711)
chr8 (186-225)||(33445581-33445620)
chr8 (177-225)||(10320507-10320555)
chr8 (189-225)||(11104775-11104811)
chr8 (189-225)||(15167061-15167097)
[»] chr2 (3 HSPs)
chr2 (187-223)||(34364507-34364543)
chr2 (186-223)||(41939119-41939156)
chr2 (173-225)||(31156824-31156876)
[»] chr7 (5 HSPs)
chr7 (186-225)||(21164769-21164808)
chr7 (187-225)||(45151388-45151426)
chr7 (181-222)||(23374636-23374677)
chr7 (178-210)||(20151838-20151870)
chr7 (193-225)||(24614706-24614738)
[»] chr5 (6 HSPs)
chr5 (186-225)||(20370141-20370180)
chr5 (172-225)||(11017187-11017240)
chr5 (188-225)||(13044450-13044487)
chr5 (188-225)||(13114448-13114485)
chr5 (192-228)||(33058958-33058994)
chr5 (189-225)||(37054283-37054319)
[»] chr1 (6 HSPs)
chr1 (186-225)||(3573335-3573374)
chr1 (193-223)||(12591825-12591855)
chr1 (172-225)||(19396188-19396241)
chr1 (192-225)||(29059422-29059455)
chr1 (173-225)||(45701339-45701391)
chr1 (190-222)||(49432008-49432040)
[»] scaffold1320 (1 HSPs)
scaffold1320 (189-225)||(1773-1809)
[»] chr4 (2 HSPs)
chr4 (189-225)||(25999408-25999444)
chr4 (197-225)||(55430607-55430635)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 27687198 - 27687000
Alignment:
Q  4 acacagtcaaatcttcgatatggttagtgacttacctaagacattaagggattgttactaaagaatggagttgagtaccaagacatttaagatacgaaag 103  Q
    |||||||||||||||| ||  |||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||    
T  27687198 acacagtcaaatcttcaat--ggttagcgacttacctaagacattaagggattgttactaaagaagcgaattgagtaccaagacattgaagatacgaaag 27687101  T
Q  104 ttcaattttgttgaagacctttagtagtttgtttcatttaaaaatttaatcatcttttcttttggtaaccggaattcgaacttcaaaccttatatatatt 203  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||  ||| ||| |||| ||| ||  |||||| |||||||    
T  27687100 ttcaattttgttgaagacctttaatagtttgtttcatttaaaaatttaatcattttttttttttataatcgggattcaaacatcggaccttacatatatt 27687001  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 49570233 - 49570271
Alignment:
Q  172 ccggaattcgaacttcaaaccttatatatattatgcatt 210  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  49570233 ccggattttgaacttcaaaccttatatatattatgcatt 49570271  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 10267783 - 10267754
Alignment:
Q  196 tatatattatgcattattcctaccaactga 225  Q
    ||||||||||||||||||||||||||||||    
T  10267783 tatatattatgcattattcctaccaactga 10267754  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 45254290 - 45254242
Alignment:
Q  177 attcgaacttcaaaccttatatatattatgcattattcctaccaactga 225  Q
    ||||||||| ||||||||| |||||||||||||| | | ||||||||||    
T  45254290 attcgaactccaaaccttacatatattatgcattgtccttaccaactga 45254242  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 29457230 - 29457192
Alignment:
Q  187 caaaccttatatatattatgcattattcctaccaactga 225  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29457230 caaaccttatatatattatgcatttttcctaccaactga 29457192  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 30639428 - 30639476
Alignment:
Q  177 attcgaacttcaaaccttatatatattatgcattattcctaccaactga 225  Q
    |||||||| ||| |||||  |||||||||||||||||||||||||||||    
T  30639428 attcgaacctcagaccttgcatatattatgcattattcctaccaactga 30639476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 135220 - 135172
Alignment:
Q  177 attcgaacttcaaaccttatatatattatgcattattcctaccaactga 225  Q
    ||||||||| |||||||| |||||| |||| ||| ||||||||||||||    
T  135220 attcgaactccaaaccttgtatataatatgtattgttcctaccaactga 135172  T

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Target: scaffold0161 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 26753 - 26709
Alignment:
Q  181 gaacttcaaaccttatatatattatgcattattcctaccaactga 225  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||    
T  26753 gaactttaaaccttatatatattatgcattatccctaacaactga 26709  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 1230667 - 1230711
Alignment:
Q  181 gaacttcaaaccttatatatattatgcattattcctaccaactga 225  Q
    |||| |||||||||| |||||||||||||| ||||||||||||||    
T  1230667 gaacctcaaaccttacatatattatgcattgttcctaccaactga 1230711  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 33445620 - 33445581
Alignment:
Q  186 tcaaaccttatatatattatgcattattcctaccaactga 225  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  33445620 tcaaaccttgtatatattatgcattgttcctaccaactga 33445581  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 10320555 - 10320507
Alignment:
Q  177 attcgaacttcaaaccttatatatattatgcattattcctaccaactga 225  Q
    |||||||| ||| |||||| |||||||||||||||||| || |||||||    
T  10320555 attcgaacctcataccttacatatattatgcattattcttatcaactga 10320507  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 11104811 - 11104775
Alignment:
Q  189 aaccttatatatattatgcattattcctaccaactga 225  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  11104811 aaccttgtatatattatgcattgttcctaccaactga 11104775  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 15167097 - 15167061
Alignment:
Q  189 aaccttatatatattatgcattattcctaccaactga 225  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  15167097 aaccttatgtatattatgcattgttcctaccaactga 15167061  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 34364507 - 34364543
Alignment:
Q  187 caaaccttatatatattatgcattattcctaccaact 223  Q
    |||||||| ||||||||||||||||||||||||||||    
T  34364507 caaaccttgtatatattatgcattattcctaccaact 34364543  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 41939119 - 41939156
Alignment:
Q  186 tcaaaccttatatatattatgcattattcctaccaact 223  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  41939119 tcaaaccttacatatattatgcattatccctaccaact 41939156  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 31156876 - 31156824
Alignment:
Q  173 cggaattcgaacttcaaaccttatatatattatgcattattcctaccaactga 225  Q
    ||||||||||||  || | |||| |||||||||||||||| ||||||||||||    
T  31156876 cggaattcgaaccccagatcttacatatattatgcattatccctaccaactga 31156824  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 21164769 - 21164808
Alignment:
Q  186 tcaaaccttatatatattatgcattattcctaccaactga 225  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  21164769 tcaaaccttatatatattatgcattatccataccaactga 21164808  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 45151426 - 45151388
Alignment:
Q  187 caaaccttatatatattatgcattattcctaccaactga 225  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  45151426 caaaccttacatatattatgcattattcctatcaactga 45151388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 23374636 - 23374677
Alignment:
Q  181 gaacttcaaaccttatatatattatgcattattcctaccaac 222  Q
    ||||| ||||||||| |||||||||||||||||| |||||||    
T  23374636 gaactccaaaccttacatatattatgcattattcttaccaac 23374677  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 20151838 - 20151870
Alignment:
Q  178 ttcgaacttcaaaccttatatatattatgcatt 210  Q
    |||||||||||||||||||||||||||| ||||    
T  20151838 ttcgaacttcaaaccttatatatattatacatt 20151870  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 24614738 - 24614706
Alignment:
Q  193 ttatatatattatgcattattcctaccaactga 225  Q
    ||||||||||||||||||||||||| |||||||    
T  24614738 ttatatatattatgcattattcctatcaactga 24614706  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 20370141 - 20370180
Alignment:
Q  186 tcaaaccttatatatattatgcattattcctaccaactga 225  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  20370141 tcaaaccttgtatatattatgcattatccctaccaactga 20370180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 11017240 - 11017187
Alignment:
Q  172 ccggaattcgaacttcaaaccttatatatattatgcattattcctaccaactga 225  Q
    |||| |||||||| ||| |||||  |||||||||||||||| ||||||||||||    
T  11017240 ccgggattcgaacctcagaccttgcatatattatgcattatccctaccaactga 11017187  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 13044487 - 13044450
Alignment:
Q  188 aaaccttatatatattatgcattattcctaccaactga 225  Q
    |||||||  |||||||||||||||||||||||||||||    
T  13044487 aaaccttgcatatattatgcattattcctaccaactga 13044450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 13114485 - 13114448
Alignment:
Q  188 aaaccttatatatattatgcattattcctaccaactga 225  Q
    |||||||  |||||||||||||||||||||||||||||    
T  13114485 aaaccttgcatatattatgcattattcctaccaactga 13114448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 33058958 - 33058994
Alignment:
Q  192 cttatatatattatgcattattcctaccaactgatct 228  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  33058958 cttatatatattatgcattatttctagcaactgatct 33058994  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 37054283 - 37054319
Alignment:
Q  189 aaccttatatatattatgcattattcctaccaactga 225  Q
    |||||||||||||||||||||| | ||||||||||||    
T  37054283 aaccttatatatattatgcattgtccctaccaactga 37054319  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 3573335 - 3573374
Alignment:
Q  186 tcaaaccttatatatattatgcattattcctaccaactga 225  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  3573335 tcaaaccttacatatattatgcattgttcctaccaactga 3573374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 12591825 - 12591855
Alignment:
Q  193 ttatatatattatgcattattcctaccaact 223  Q
    |||||||||||||||||||||||||||||||    
T  12591825 ttatatatattatgcattattcctaccaact 12591855  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 19396188 - 19396241
Alignment:
Q  172 ccggaattcgaacttcaaaccttatatatattatgcattattcctaccaactga 225  Q
    |||| |||| ||| |||||||||  |||||||||||||||| ||||||||||||    
T  19396188 ccgggattcaaacatcaaaccttgcatatattatgcattatccctaccaactga 19396241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 29059422 - 29059455
Alignment:
Q  192 cttatatatattatgcattattcctaccaactga 225  Q
    ||||||||||||||||||||||| ||||||||||    
T  29059422 cttatatatattatgcattattcttaccaactga 29059455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 45701391 - 45701339
Alignment:
Q  173 cggaattcgaacttcaaaccttatatatattatgcattattcctaccaactga 225  Q
    ||||||||||||| || |||||| |||| ||||||||| ||| ||||||||||    
T  45701391 cggaattcgaactccagaccttacatattttatgcattgttcataccaactga 45701339  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 49432008 - 49432040
Alignment:
Q  190 accttatatatattatgcattattcctaccaac 222  Q
    |||||| ||||||||||||||||||||||||||    
T  49432008 accttacatatattatgcattattcctaccaac 49432040  T

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Target: scaffold1320 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 1773 - 1809
Alignment:
Q  189 aaccttatatatattatgcattattcctaccaactga 225  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  1773 aaccttatgtatattatgcattgttcctaccaactga 1809  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 25999444 - 25999408
Alignment:
Q  189 aaccttatatatattatgcattattcctaccaactga 225  Q
    |||||||||||||||||||||| | ||||||||||||    
T  25999444 aaccttatatatattatgcattgtccctaccaactga 25999408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 55430635 - 55430607
Alignment:
Q  197 atatattatgcattattcctaccaactga 225  Q
    |||||||||||||||||||||||||||||    
T  55430635 atatattatgcattattcctaccaactga 55430607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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