View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10091_high_8 (Length: 229)
Name: NF10091_high_8
Description: NF10091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10091_high_8 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0634 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10127407 - 10127629
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttgaatgatcaaacaaagtgttaatttaggaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
10127407 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcatggtttcaactctttgaatgaccaaataaagtgttaatttaagaaaa |
10127506 |
T |
|
| Q |
101 |
ggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacatagggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10127507 |
ggaatattaatcacaaatgatcaaacggattaatagttttagtaatgggattggtgattaaatataaataaaggaatttaattagaactagacataaggg |
10127606 |
T |
|
| Q |
201 |
aattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
10127607 |
aattgaaacttgcaagttaaacc |
10127629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 11543654 - 11543876
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttgaatgatcaaacaaagtgttaatttaggaaa |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
11543654 |
accttaattttagtcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttgaatgatcaaacaaagtgttaacttaggaga |
11543753 |
T |
|
| Q |
100 |
aggaatattaatcacaaatgatcaaacggattaatagttttagt-aaagggattggtgattaaatataaataaaggaatttaattagaactagacatagg |
198 |
Q |
| |
|
| ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||| ||||||||||||||| | |
|
|
| T |
11543754 |
aagaatattaatcacgaatgaccaaacggattaatagttttagtaaaagggattggtgattgaatgaaaat--aggaatttgattagaactagacattag |
11543851 |
T |
|
| Q |
199 |
ggaattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
||||| ||||||||||| ||||||| |
|
|
| T |
11543852 |
ggaatcgaaacttgcaattgaaacc |
11543876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 21432205 - 21431995
Alignment:
| Q |
11 |
tagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttgaatgatcaaacaaagtgttaatttaggaaaaggaatattaa |
110 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || ||||||||| |
|
|
| T |
21432205 |
tagtcttccaatcattcaaccttttcacgcttcatgcttttcttggtttcaactctttgaatgaccaaacaaagtgttaacttaggagaaagaatattaa |
21432106 |
T |
|
| Q |
111 |
tcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggggaattgaaact |
210 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
21432105 |
tcacgaatgaccaaacaaattaatagttttagtaaagggattggtgattgaataaaaat--aggaatttgattagaactagacattagggaatcgaaact |
21432008 |
T |
|
| Q |
211 |
tgcaagtgaaacc |
223 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21432007 |
tgcaagtgaaacc |
21431995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 16139488 - 16139265
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttgg-tttcaactctttgaatgatcaaacaaagtgttaatttaggaaa |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
16139488 |
accttaattttagtcttccaatcattcaacctttttacactttatgcttttctttaatttgaactctttgcatgatcaaacaaagtgttaatttaagaaa |
16139389 |
T |
|
| Q |
100 |
ag--gaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacatag |
197 |
Q |
| |
|
| ||||||||| ||| ||||| |||| ||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
16139388 |
aaaagaatattaaccacgaatgaccaaatggattaatagttttagttaagggattggtgattgaataaaaat--aggaatttaattagaactagacataa |
16139291 |
T |
|
| Q |
198 |
gggaattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
16139290 |
aggaatcaaaacttgcaagtgaaacc |
16139265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27611651 - 27611872
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttgaatgatcaaacaaagtgttaatttaggaaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
27611651 |
accttaattttagtcttccaatcattcaaccttttcgcgctttatgcttttcttggtttcaactctttgaatgaccaaacaaagtgttaatttaagaaaa |
27611750 |
T |
|
| Q |
101 |
ggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacatagggg |
200 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||| ||| |
|
|
| T |
27611751 |
agaatattaatcacgaatgaccaaacggattaatagttttagtaaagggattggtga-tgaataaaaataaaggaattgaattagaactagacattaggg |
27611849 |
T |
|
| Q |
201 |
aattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
27611850 |
aatcgaaacttgcaagtgaaacc |
27611872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 10890166 - 10890379
Alignment:
| Q |
9 |
tttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttgaatgatcaaacaaagtgttaatttaggaaaaggaatat |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| || |||||| |
|
|
| T |
10890166 |
tttagtcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttgaatgatcaaacgaagtgttaacttaggagaaagaatat |
10890265 |
T |
|
| Q |
108 |
taatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggggaattgaa |
207 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
10890266 |
taatcacgaatgaccaaacggattaatagttttagtaaagggattggtgattgaatgaaaat--aggaatttgattagaactagacattagggaatcgaa |
10890363 |
T |
|
| Q |
208 |
acttgcaagtgaaacc |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10890364 |
acttgcaagtgaaacc |
10890379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22406265 - 22406046
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttgaatgatcaaacaaagtgttaatttaggaaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |
|
|
| T |
22406265 |
accttaattttagtcttccaatcattcaaccttttcgcgcttcatgcttttcttggtttcaactctttgaatgaccaaacaaagtgttaacttaggagaa |
22406166 |
T |
|
| Q |
101 |
ggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacatagggg |
200 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||||||| | || |
|
|
| T |
22406165 |
agaatattaatcacgaatgaccaaacggattaatagttttagtaaagggattggtgattgaataaaaat--aggaatttgattagaactagaca-aaagg |
22406069 |
T |
|
| Q |
201 |
aattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
22406068 |
aatcgaaacttgcaagtgaaacc |
22406046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23164843 - 23164631
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttgaatgatcaaacaaagtgttaatttaggaaa |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| | |
|
|
| T |
23164843 |
accttaattttagtcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttgaatgaccaaacaaagtgttaacttaggaga |
23164744 |
T |
|
| Q |
100 |
aggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggg |
199 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||| |||||||| |||||||||||||||| | |
|
|
| T |
23164743 |
aagaatattaatcacaaatgatcaaacagattaatag---------cgggattggtgattgaataaaaat--aggaatttgattagaactagacataaag |
23164655 |
T |
|
| Q |
200 |
gaattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
23164654 |
gaatccaaacttgcaagtgaaacc |
23164631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23576100 - 23575888
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttgaatgatcaaacaaagtgttaatttaggaaa |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| | |
|
|
| T |
23576100 |
accttaattttagtcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttgaatgaccaaacaaagtgttaacttaggaga |
23576001 |
T |
|
| Q |
100 |
aggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggg |
199 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||| |||||||| |||||||||||||||| | |
|
|
| T |
23576000 |
aagaatattaatcacaaatgatcaaacagattaatag---------cgggattggtgattgaataaaaat--aggaatttgattagaactagacataaag |
23575912 |
T |
|
| Q |
200 |
gaattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
23575911 |
gaatccaaacttgcaagtgaaacc |
23575888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 11009834 - 11009939
Alignment:
| Q |
116 |
aatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggggaattgaaacttgcaa |
215 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||||| | | ||||| |||||||||| |
|
|
| T |
11009834 |
aatgaccaaacagattaatagttttagtaaagggattggtgattgaataaaaat--aggaatttgattagaactagaaaaaaaggaatcaaaacttgcaa |
11009931 |
T |
|
| Q |
216 |
gtgaaacc |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
11009932 |
gtgaaacc |
11009939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14276987 - 14276767
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttgaatgatcaaacaaagtgttaatttaggaaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
14276987 |
accttaattttagtcttccaatcattcaaccttttcgtgctttgtgcttttcttggtttcaactctttgaatgaccaaacaaagtgttaatttaagaaaa |
14276888 |
T |
|
| Q |
101 |
ggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacatagggg |
200 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||||||| | || |
|
|
| T |
14276887 |
agaatattaatcacgaatgaccaaacggattaatagttttagtaaagggattggtgattgaataaaaat--aggaatttgattagaactagacaaaaagg |
14276790 |
T |
|
| Q |
201 |
aattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
14276789 |
aatcgaaacttgcaagtgaaacc |
14276767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 37470630 - 37470419
Alignment:
| Q |
9 |
tttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttgaatgatcaaacaaagtgttaatttaggaaaaggaatatt |
108 |
Q |
| |
|
||||||| ||||||| |||||| |||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
37470630 |
tttagtcgtccaatcgttcaaccttttcgcgctttatgcttttcttggtttcaactctttgaatgaccaaacaaagtgttaaattaagaaaaagaatatt |
37470531 |
T |
|
| Q |
109 |
aatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggggaattgaaa |
208 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||||||| | ||||| |||| |
|
|
| T |
37470530 |
aatcacgaatgaccaaacggattaatagttttagtaaagggattggtgattgaataaaaat--aggaatttgattagaactagacaaaaaggaatcgaaa |
37470433 |
T |
|
| Q |
209 |
cttgcaagtgaaac |
222 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37470432 |
cttgcaagtgaaac |
37470419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45279490 - 45279710
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttgaatgatcaaacaaagtgttaatttaggaaa |
99 |
Q |
| |
|
||||||| ||||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
45279490 |
accttaattttagtctttcagtcattcaacctttttgtgctttatgcttttcttgagtttcaactctttgaatgacaaaacaaagtgttaacttaggaaa |
45279589 |
T |
|
| Q |
100 |
aggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggg |
199 |
Q |
| |
|
| ||||||||||||| ||||| || | ||||||||||||||| | ||||||||||||||| |||| ||||||||||||| |||||||||||||||| || |
|
|
| T |
45279590 |
aagaatattaatcacgaatgaccagatggattaatagttttact-aagggattggtgattgaataaaaataaaggaattgaattagaactagacattagg |
45279688 |
T |
|
| Q |
200 |
gaattgaaacttgcaagtgaaa |
221 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
45279689 |
gaatcgaaacttgcaagtgaaa |
45279710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10889735 - 10889512
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttgaatgatcaaacaaagtgttaatttaggaaa |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
10889735 |
accttaattttagtcttccaatcattcaaccttttcgtgctttatgcttttcttgagtttcaactctttgcatgatcaaacaaagtgttaatttaagaaa |
10889636 |
T |
|
| Q |
100 |
aggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggg |
199 |
Q |
| |
|
| ||||||||||||| ||||| ||||| ||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
10889635 |
aagaatattaatcacgaatgaccaaacaaattaatagttttagttaagggtttggtgattgaataaaaataaaggaatttaattagaactagacataaag |
10889536 |
T |
|
| Q |
200 |
gaattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
10889535 |
gaatcaaaacttgcaagtgaaacc |
10889512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31962326 - 31962539
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttgaatgatcaaacaaagtgttaatttaggaaa |
99 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
31962326 |
accttaattttagtcttccagtcattcaacctttttgtgctttatgcttttcttgagtttcaactctttgaatgaccaaacaaagtgttaacttaggaaa |
31962425 |
T |
|
| Q |
100 |
aggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggg |
199 |
Q |
| |
|
| ||||||||||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||| || |
|
|
| T |
31962426 |
aagaatattaatcacgaa----------gattaatagttttactaaagggattggtgattgaataaaaataaaggaattgaattagaactagacattagg |
31962515 |
T |
|
| Q |
200 |
gaattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
31962516 |
gaatcaaaacttgcaagtgaaacc |
31962539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 23616481 - 23616611
Alignment:
| Q |
91 |
tttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaacta |
190 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||| |||||| ||||| |||| |||| || |||||||||||||||| |
|
|
| T |
23616481 |
tttaggaaaaagaatattaaccacgaatgaccaaacggattaatagttttagtaaatggattgatgattgaataaaaat--agaaatttaattagaacta |
23616578 |
T |
|
| Q |
191 |
gacataggggaattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
|||||| | ||| |||||||||||||||||| |
|
|
| T |
23616579 |
gacataaagtaatcaaaacttgcaagtgaaacc |
23616611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 23616376 - 23616455
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttgaatgatcaaa |
79 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||| |||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
23616376 |
accttaattttagtcttccaatctttcaatctttttacactttatgcttttcttgaatttgaactctttgcatgatcaaa |
23616455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4172 - 3951
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttgaatgatcaaacaaagtgttaatttaggaaa |
99 |
Q |
| |
|
||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
4172 |
accttaattttaatcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttgaatgatcaaacaaagtgttaacttaggaga |
4073 |
T |
|
| Q |
100 |
aggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggg |
199 |
Q |
| |
|
| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||| || |
|
|
| T |
4072 |
aagaatattaatcacgaatgaccaaacagattaatagttttagtaaagggattggtgattgaataaaaat--aggaatttgattagaactagacattagg |
3975 |
T |
|
| Q |
200 |
gaattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
3974 |
gaatcgaaacttgcaagtgaaacc |
3951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8020 - 7800
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttgaatgatcaaacaaagtgttaatttaggaaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |
|
|
| T |
8020 |
accttaattttagtcttccaatcattcaaccttttcgcgcttcatgcttttcttggtttcaactctttgaatgaccaaacaaagtgttaacttaggagaa |
7921 |
T |
|
| Q |
101 |
ggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacatagggg |
200 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||| ||| |
|
|
| T |
7920 |
agaatattaatcacgaatgaccaaacggattagtagttttagtaaagggattggtgattgaataaaaat--aggaatttgattagaactagacattaggg |
7823 |
T |
|
| Q |
201 |
aattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
7822 |
aatcgaaacttgcaagtgaaacc |
7800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 119666 - 119885
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttgaatgatcaaacaaagtgttaatttaggaaa |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
119666 |
accttaattttagtcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttgaatgatcaaacgaagtgttaacttaggaga |
119765 |
T |
|
| Q |
100 |
aggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggg |
199 |
Q |
| |
|
| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||| || |
|
|
| T |
119766 |
aagaatattaatcacgaatgaccaaacggattaatagttttagtaaagggattggtgattgaatgaaaat--aggaatttgattagaactagacattagg |
119863 |
T |
|
| Q |
200 |
gaattgaaacttgcaagtgaaa |
221 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
119864 |
gaatcgaaacttgcaagtgaaa |
119885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 17342445 - 17342665
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttgaatgatcaaacaaagtgttaatttaggaaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |
|
|
| T |
17342445 |
accttaattttagtcttccaatcattcaaccttttcgcgctttatgcttttcttggtttcaactctttgaatgaccaaacaaagtgttaacttaggagaa |
17342544 |
T |
|
| Q |
101 |
ggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacatagggg |
200 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||| |||| |||||||||| |||||||||||||| | |
|
|
| T |
17342545 |
agaatattaatcatgaatgaccaaacggattaatagttatagtaaagggattggtgattgaataaaaat--aggaatttaaatagaactagacataaaag |
17342642 |
T |
|
| Q |
201 |
aattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
17342643 |
aatccaaacttgcaagtgaaacc |
17342665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 7728154 - 7727941
Alignment:
| Q |
9 |
tttagtcttccaatcattcaacttttttgtgctttatgcttttcttgg-tttcaactctttgaatgatcaaacaaagtgttaatttaggaaaaggaatat |
107 |
Q |
| |
|
|||| ||||||||||||||||| |||| | |||||| |||||||| ||||||||||||||||| |||||||| |||||| || |||||| ||||| |
|
|
| T |
7728154 |
tttactcttccaatcattcaacattttcgcactttatacttttcttaaatttcaactctttgaatggccaaacaaaatgttaacttgggaaaaagaataa |
7728055 |
T |
|
| Q |
108 |
taatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggggaattgaa |
207 |
Q |
| |
|
|| |||| ||||| ||||| ||| |||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||| || |||||| || |
|
|
| T |
7728054 |
ta-tcaccaatgaccaaacaagttag-agttttagtaaagggattaatgattaaataaaaacaaaggaatttaagtagaactagatctaagggaatcaaa |
7727957 |
T |
|
| Q |
208 |
acttgcaagtgaaacc |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7727956 |
tcttgcaagtgaaacc |
7727941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 13812975 - 13812868
Alignment:
| Q |
116 |
aatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggggaattgaaacttgcaa |
215 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||| ||||||||||| |||| ||||||||||||| |||||||||||||||| |||||| |||| |||||| |
|
|
| T |
13812975 |
aatgaccaaacagattaatagttttactaaagtgattggtgattgaataaaaataaaggaattgaattagaactagacattagggaatcgaaaattgcaa |
13812876 |
T |
|
| Q |
216 |
gtgaaacc |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
13812875 |
gtgaaacc |
13812868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 27163337 - 27163215
Alignment:
| Q |
71 |
atgatcaaacaaagtgttaatttaggaaaag-gaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaat |
169 |
Q |
| |
|
|||| |||||| | ||||||||||| |||| |||||||||| | ||||||||||| |||||||||||| ||||||||||| | || |||| |||| |
|
|
| T |
27163337 |
atgaccaaacacaatgttaatttagaaaaaaagaatattaattaagaatgatcaaacaaattaatagtttttgtaaagggattcgagaccgaataaaaat |
27163238 |
T |
|
| Q |
170 |
aaaggaatttaattagaactaga |
192 |
Q |
| |
|
||||||||||| |||||| |||| |
|
|
| T |
27163237 |
aaaggaatttatttagaattaga |
27163215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13813020 - 13812976
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttat |
45 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
13813020 |
accttaattttagtcttccagtcattcaacctttttgtgctttat |
13812976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 21962 - 22106
Alignment:
| Q |
1 |
accttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttgaatgatcaaacaaagtgttaatttaggaaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| || |
|
|
| T |
21962 |
accttaattttagtcttccaatcattcaaccttttcgcgctttatgcttttcttggtttcatctctttgaatgaccaaacaaagtgttaacttaggagaa |
22061 |
T |
|
| Q |
101 |
ggaatattaatcacaaatgatcaaacggattaatagttttagtaa |
145 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
22062 |
agaatattaatcatgaatgaccaaacggattaatagttttagtaa |
22106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 26115742 - 26115898
Alignment:
| Q |
64 |
tctttgaatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaat |
163 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
26115742 |
tctttgcatgatcaaacatagtgttaatttaggaaagagaatattaatcacgaatgaccaaacggattaatagttttagtaaagagattggtgattgaat |
26115841 |
T |
|
| Q |
164 |
ataaataaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaac |
222 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
26115842 |
ataaat--aggaatttaattagaactagacataaagaaatcaaaacttgcaagtgaaac |
26115898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 48180396 - 48180222
Alignment:
| Q |
12 |
agtcttccaatcattcaacttttttgtgctttatgcttttcttgg-tttcaactctttgaatgatcaaacaaagtgttaatttaggaaaaggaatattaa |
110 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
48180396 |
agtcttccaatcattcaaccttttta--ctatatgcttttcttgaatttgaactctttgcatgatcaaacaaagtgttaattcaggaaaaagaagattaa |
48180299 |
T |
|
| Q |
111 |
tcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaa |
187 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||||| ||||| |
|
|
| T |
48180298 |
tcacaaataaccaaacatattaatagttttagtaaagggattgatgattgaataaaaataaaggaatttaagtagaa |
48180222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0634 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0634
Description:
Target: scaffold0634; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 3747 - 3890
Alignment:
| Q |
69 |
gaatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaa |
168 |
Q |
| |
|
|||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||| |
|
|
| T |
3747 |
gaatgaccaaacaaagtgttaacttaggagaaagaatattaatcacaaatgatcaaacagattaatag---------cgggattggtgattgaataaaaa |
3837 |
T |
|
| Q |
169 |
taaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
223 |
Q |
| |
|
| |||||||| |||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
3838 |
t--aggaatttgattagaactagacataaaggaatccaaacttgcaagtgaaacc |
3890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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