View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10091_low_1 (Length: 503)
Name: NF10091_low_1
Description: NF10091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10091_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 224 - 490
Target Start/End: Original strand, 12552303 - 12552569
Alignment:
| Q |
224 |
ttcgagagctataaataatgtgannnnnnnnatttgtcttgtaggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaatt |
323 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12552303 |
ttcgagagctataaataatgtgattttttttatttgtcttgtagatggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaatt |
12552402 |
T |
|
| Q |
324 |
attggaacacaaacataaggaaaaagcttctcaagatgggaattgatcctgaaactcacaagccaagaactgattacaatcacctcatgagtctttcaaa |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12552403 |
attggaacacaaacataaggaaaaagcttctcaagatgggaattgatcctgaaactcacaagccaagaactgattacaatcacctcatgagtctttcaaa |
12552502 |
T |
|
| Q |
424 |
cttacttggcatgtcaaatataggcaatacttttagcaacaaccctcttggtttacaaccagatatt |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12552503 |
cttacttggcatgtcaaatataggcaatacttttagcaacaaccctcttggtttacaaccagatatt |
12552569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 12552026 - 12552231
Alignment:
| Q |
20 |
atcaagagagggaaattcacagatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagtatatttcttaacttgttttttcttatg |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12552026 |
atcaagagagggaaattcactgatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagtatatttcttatcttgttttttcttatg |
12552125 |
T |
|
| Q |
120 |
tagaaaatgatattgaaatcactctaaagatagcgacggaatttcacagacggaaaaaataatttcgtctctaattccatcactaagtgtt--agacgtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12552126 |
tagaaaatgatattgaaatcactctaaagatagcgacggaatttcagagacggaaaaaataatttcgtctctaattccatcactaagtgttagagacgtc |
12552225 |
T |
|
| Q |
218 |
aatttt |
223 |
Q |
| |
|
|||||| |
|
|
| T |
12552226 |
aatttt |
12552231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 42422690 - 42422618
Alignment:
| Q |
300 |
gaacagataacgagataaaaaattattggaacacaaacataaggaaaaagcttctcaagatgggaattgatcc |
372 |
Q |
| |
|
||||||| || ||||| |||||| ||||||||||| |||| | ||||||||| | ||||||||||||||||| |
|
|
| T |
42422690 |
gaacagacaatgagattaaaaatcattggaacacacacatcaagaaaaagctcattaagatgggaattgatcc |
42422618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 50200060 - 50200020
Alignment:
| Q |
291 |
taccaggacgaacagataacgagataaaaaattattggaac |
331 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
50200060 |
taccaggacgtacagataatgagataaaaaattattggaac |
50200020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 27808566 - 27808608
Alignment:
| Q |
291 |
taccaggacgaacagataacgagataaaaaattattggaacac |
333 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||||||| |
|
|
| T |
27808566 |
taccaggaagaacagataatgagataaagaattattggaacac |
27808608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 13344872 - 13344938
Alignment:
| Q |
265 |
taggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaattattggaac |
331 |
Q |
| |
|
|||||||||| ||| ||| | ||| ||||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
13344872 |
taggtggtcggtgatagcatcacatttaccaggacgaacagataatgagataaagaactattggaac |
13344938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 45675867 - 45675811
Alignment:
| Q |
266 |
aggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaat |
322 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||| ||||||| || |||||||||||| |
|
|
| T |
45675867 |
aggtggtcgcagattgcagctcagttacctggaagaacagacaatgagataaaaaat |
45675811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University