View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_high_14 (Length: 364)

Name: NF10092A_high_14
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_high_14
NF10092A_high_14
[»] chr2 (2 HSPs)
chr2 (16-341)||(1813256-1813581)
chr2 (82-115)||(6626745-6626778)
[»] chr7 (3 HSPs)
chr7 (19-115)||(38622842-38622938)
chr7 (17-52)||(28976333-28976368)
chr7 (73-122)||(28976435-28976484)
[»] chr4 (2 HSPs)
chr4 (19-122)||(33714190-33714293)
chr4 (54-115)||(26275538-26275599)
[»] chr3 (1 HSPs)
chr3 (15-52)||(7877850-7877887)
[»] chr8 (2 HSPs)
chr8 (47-115)||(1310132-1310200)
chr8 (19-52)||(18899949-18899982)
[»] chr6 (1 HSPs)
chr6 (48-115)||(430983-431050)
[»] chr5 (1 HSPs)
chr5 (35-115)||(8928378-8928458)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 1813581 - 1813256
Alignment:
Q  16 atggtttgttcaaattccactacacaacagtgctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1813581 atggtttgttcaaattccgctacacaacagtgctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 1813482  T
Q  116 ctccactgagcaataacactgctagctagtatttggcaacactgagtttgaggggaaaatacctccagctttaacaacatcaacaaggtcatccttcaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1813481 ctccactgagcaataacactgctagctagtatttggcaacactgagtttgaggggaaaatacctccagctttaacaacatcaacaaggtcatccttcaag 1813382  T
Q  216 atgacaagaattgaacgagggatcgcaccaacacctagcacctgtgtactctcttggacttttatctcctgataatcatggcacactatagtatctttta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1813381 atgacaagaattgaacgagggatcgcaccaacacctagcacctgtgtactctcttggacttttatctcctgataatcatggcacactgtagtatctttta 1813282  T
Q  316 catactcgaattttgtacctccacag 341  Q
    ||||||||||||||||||||||||||    
T  1813281 catactcgaattttgtacctccacag 1813256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 6626745 - 6626778
Alignment:
Q  82 tagtgtatcatggaacaatagcggtttgttcaaa 115  Q
    ||||||||||||||||||||||| ||||||||||    
T  6626745 tagtgtatcatggaacaatagcgatttgttcaaa 6626778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 38622842 - 38622938
Alignment:
Q  19 gtttgttcaaattccactacacaacagtgctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 115  Q
    ||||||||||||| | ||| |||||| ||||||| |||||| || ||||  || ||| |||| |||||||||||||||||||| || ||| ||||||    
T  38622842 gtttgttcaaatttcgctatacaacaatgctatagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaa 38622938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 28976333 - 28976368
Alignment:
Q  17 tggtttgttcaaattccactacacaacagtgctata 52  Q
    |||||||||||||||||||||||||||| |||||||    
T  28976333 tggtttgttcaaattccactacacaacaatgctata 28976368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 28976435 - 28976484
Alignment:
Q  73 tgtactaagtagtgtatcatggaacaatagcggtttgttcaaactccact 122  Q
    |||||||| ||||||||||||||| |||||| ||||||| ||| ||||||    
T  28976435 tgtactaaatagtgtatcatggaaaaatagcagtttgtttaaattccact 28976484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 33714190 - 33714293
Alignment:
Q  19 gtttgttcaaattccactacacaacagtgctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaactc 118  Q
    ||||||||||||||| |||| || ||||| ||||||  ||| |||||||| || |||||||| | |  |||| |||||||| |||| |||||||||| ||    
T  33714190 gtttgttcaaattccgctacgcatcagtgttataacgtctatttcacaatattttgtactaaatggcttatcgtggaacaacagcgatttgttcaaattc 33714289  T
Q  119 cact 122  Q
    ||||    
T  33714290 cact 33714293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 26275538 - 26275599
Alignment:
Q  54 ccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 115  Q
    |||||| |||||||| || |||||||| ||| ||||  ||||||||||||| ||||||||||    
T  26275538 ccgctatttcacaatattttgtactaaatagcgtattttggaacaatagcgatttgttcaaa 26275599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 7877887 - 7877850
Alignment:
Q  15 tatggtttgttcaaattccactacacaacagtgctata 52  Q
    |||||||||||||||||||||||||| |||||||||||    
T  7877887 tatggtttgttcaaattccactacactacagtgctata 7877850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 1310200 - 1310132
Alignment:
Q  47 gctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 115  Q
    |||||| |||||| |||||||| |  |||||||| |||||||||| |||||||||||  ||||||||||    
T  1310200 gctatagccgctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaa 1310132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 18899949 - 18899982
Alignment:
Q  19 gtttgttcaaattccactacacaacagtgctata 52  Q
    ||||||||||||||| ||||||||||||||||||    
T  18899949 gtttgttcaaattccgctacacaacagtgctata 18899982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 431050 - 430983
Alignment:
Q  48 ctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 115  Q
    ||||| |||||| || ||||| || ||||||||||||| ||| |||||||||||| | ||||||||||    
T  431050 ctatagccgctatttaacaatattttgtactaagtagtttataatggaacaatagtgatttgttcaaa 430983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 8928378 - 8928458
Alignment:
Q  35 ctacacaacagtgctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 115  Q
    ||||||||||||| | || | | || |||| ||| || |||||||| ||| ||||||| ||||||||||| ||||||||||    
T  8928378 ctacacaacagtgttgtagcagttatttcagaatattttgtactaaatagcgtatcatcgaacaatagcgatttgttcaaa 8928458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University