View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_high_23 (Length: 334)

Name: NF10092A_high_23
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_high_23
NF10092A_high_23
[»] chr4 (7 HSPs)
chr4 (137-334)||(55504163-55504366)
chr4 (28-124)||(55505068-55505164)
chr4 (39-138)||(53761718-53761817)
chr4 (32-103)||(532236-532307)
chr4 (34-138)||(55908674-55908778)
chr4 (32-85)||(1537766-1537819)
chr4 (32-84)||(1489361-1489413)
[»] chr1 (4 HSPs)
chr1 (28-113)||(43634950-43635033)
chr1 (28-138)||(19468445-19468555)
chr1 (34-70)||(9586688-9586724)
chr1 (32-68)||(9581118-9581154)
[»] chr3 (3 HSPs)
chr3 (28-138)||(13470678-13470788)
chr3 (32-138)||(51764386-51764492)
chr3 (28-138)||(51113727-51113837)
[»] chr6 (11 HSPs)
chr6 (32-138)||(6589269-6589375)
chr6 (28-122)||(7119200-7119294)
chr6 (28-122)||(7131678-7131772)
chr6 (28-138)||(7994128-7994238)
chr6 (33-122)||(6394912-6395001)
chr6 (28-105)||(19632482-19632559)
chr6 (28-138)||(6402903-6403013)
chr6 (28-138)||(6416009-6416119)
chr6 (32-66)||(10579754-10579788)
chr6 (33-122)||(6432209-6432298)
chr6 (28-105)||(6585216-6585293)
[»] chr7 (1 HSPs)
chr7 (28-138)||(10614636-10614746)
[»] scaffold0807 (1 HSPs)
scaffold0807 (32-138)||(1410-1516)
[»] chr5 (2 HSPs)
chr5 (32-66)||(20478100-20478134)
chr5 (32-138)||(41889500-41889606)
[»] scaffold0295 (1 HSPs)
scaffold0295 (33-122)||(586-675)
[»] chr8 (1 HSPs)
chr8 (32-85)||(18315272-18315325)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 137 - 334
Target Start/End: Original strand, 55504163 - 55504366
Alignment:
Q  137 caactttataacacaaatctaaattattcgatatgttattttacatgtttttgatgccgannnnnnnnnnn------gtggtagtcgggattcaaaccca 230  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                 |||||   || ||||||| ||||    
T  55504163 caactttataacataaatctaaattattcgatatgttattttacatgtttttgatgccgatttttttttttttttttgtggtgaccgagattcaa-ccca 55504261  T
Q  231 atgcattgtccttaccaattga-ctaagctcgcgggggacgccgaattttaatttaatataacatactagtatatggaaaaatgtgttaaaagaaattta 329  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55504262 atgcattgtccttaccaattgagctaagctcacgggggacgccgaagttagattaaatataacatactagtatatggaaaaatgtgttaaaagaaattta 55504361  T
Q  330 atccg 334  Q
    |||||    
T  55504362 atccg 55504366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 55505164 - 55505068
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattc 124  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55505164 aacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattc 55505068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 53761817 - 53761718
Alignment:
Q  39 atgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatcttacaaca 138  Q
    |||||||||||||| ||||||||| ||| |||  |||||||||||||||||| |||||| ||||||| | ||||| |||||||| |||||| ||||||||    
T  53761817 atgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaaca 53761718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 532236 - 532307
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaa 103  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||||||||| ||| |||||| |||||    
T  532236 tttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattcactcttgaa 532307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 55908778 - 55908674
Alignment:
Q  34 tgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatctta 133  Q
    ||||| ||||||||| ||||||||||  |  || ||| ||||||| |||| || ||| |||||| |||||||||||||||  |||||||  |||| ||||    
T  55908778 tgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaacctta 55908679  T
Q  134 caaca 138  Q
    |||||    
T  55908678 caaca 55908674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 1537819 - 1537766
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattcca 85  Q
    ||||||||||||||||||||||| ||||| | ||| |||  |||||||||||||    
T  1537819 tttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcca 1537766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 1489413 - 1489361
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattcc 84  Q
    ||||||||||||||||||||||| ||||| | ||| |||  ||||||||||||    
T  1489413 tttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 1489361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 43634950 - 43635033
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggcta 113  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |  ||||||| |||||||||||||||    
T  43634950 aacctttgtatatgacaagttcaacgcctctagctgggggactctaaaggtcattccaagt--gttcactattgaacagtaggcta 43635033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 19468555 - 19468445
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattccta 127  Q
    ||||||||||| |||||| ||||||||||| |||| ||| |||  |||||||| ||||| ||| |||||| ||||||||| ||||| ||| |||| ||||    
T  19468555 aacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacagtgggctaagtttaaatgccta 19468456  T
Q  128 atcttacaaca 138  Q
    || ||| ||||    
T  19468455 atattagaaca 19468445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 9586688 - 9586724
Alignment:
Q  34 tgtatatgacaagttcaacacctctagctgggggact 70  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9586688 tgtatatgacaagttcaacacctctagcttggggact 9586724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 9581118 - 9581154
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctggggga 68  Q
    |||||| |||||||||||||||||||||||| |||||    
T  9581118 tttgtacatgacaagttcaacacctctagcttgggga 9581154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 13470788 - 13470678
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattccta 127  Q
    ||||||||||| |||||||||||||||||| || | ||| ||   |||||||||||||| ||| |||||| ||  ||| ||||||| |||||||| ||||    
T  13470788 aacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgccta 13470689  T
Q  128 atcttacaaca 138  Q
    |||||||||||    
T  13470688 atcttacaaca 13470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 51764492 - 51764386
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatct 131  Q
    |||||| |||||||||  |||||||| ||||  || |||  |||||||||||||| ||| |||||| ||||||| | || ||||||||||| ||||||||    
T  51764492 tttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatct 51764393  T
Q  132 tacaaca 138  Q
    || ||||    
T  51764392 tagaaca 51764386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 51113837 - 51113727
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattccta 127  Q
    |||| |||||| ||||||||  |||||||| || | |||  ||  |||||||||||||| ||| |||| | |||||||||| ||||  ||||||| ||||    
T  51113837 aaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgccta 51113738  T
Q  128 atcttacaaca 138  Q
    || ||||||||    
T  51113737 attttacaaca 51113727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 6589375 - 6589269
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatct 131  Q
    ||||||| |||||||||||||||||| |||  ||| |||  |||||||||||||| ||| |||||| |   |||| |||||| |||||||| ||||||||    
T  6589375 tttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatct 6589276  T
Q  132 tacaaca 138  Q
    |||||||    
T  6589275 tacaaca 6589269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 7119200 - 7119294
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaat 122  Q
    |||||| |||| |||||||||||||||||| |||||| | ||   |||||||||||||| ||| |||||| ||||||||| ||||| ||||||||    
T  7119200 aaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaat 7119294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 7131678 - 7131772
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaat 122  Q
    |||||| |||| |||||||||||||||||| |||||| | ||   |||||||||||||| ||| |||||| ||||||||| ||||| ||||||||    
T  7131678 aaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaat 7131772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 7994238 - 7994128
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattccta 127  Q
    |||| |||||| ||||| |||||||||||||||||  || |||  |||||||||||| | ||| |||||| ||| ||| | ||||| |||||||| |||     
T  7994238 aacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctg 7994139  T
Q  128 atcttacaaca 138  Q
    |||||||||||    
T  7994138 atcttacaaca 7994128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 6394912 - 6395001
Alignment:
Q  33 ttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaat 122  Q
    |||||| |||||||||||||||||| |||| ||| |||  |||||||||||||  ||| |||||| |||||||| | |||| ||||||||    
T  6394912 ttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaat 6395001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 19632482 - 19632559
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaaca 105  Q
    |||||||||||| ||||||| |||||||||||||| ||| |||  |||||| ||||||| |||||| ||| |||||||    
T  19632482 aacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaaca 19632559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 6402903 - 6403013
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattccta 127  Q
    |||||| |||| ||||||||||||||| ||||| ||||| |||  |||||| ||||||| ||| |||||| |||||||    | || |||||||| ||||    
T  6402903 aaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaagttcaaatgccta 6403002  T
Q  128 atcttacaaca 138  Q
    || ||||||||    
T  6403003 atgttacaaca 6403013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 6416009 - 6416119
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattccta 127  Q
    ||||||||||| |||||||||||||||||| || | ||| |||  ||||| |||||||  ||| |||||| ||  |||  |||||| |||||||| || |    
T  6416009 aacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgccca 6416108  T
Q  128 atcttacaaca 138  Q
    |||||||||||    
T  6416109 atcttacaaca 6416119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 10579788 - 10579754
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctgggg 66  Q
    |||||||||||||||||||||||||| ||||||||    
T  10579788 tttgtatatgacaagttcaacacctccagctgggg 10579754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 6432209 - 6432298
Alignment:
Q  33 ttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaat 122  Q
    |||||| |||||||||||||||||  |||| ||| |||  |||||||||||||  ||| |||||| ||  ||| ||||||| ||||||||    
T  6432209 ttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaaat 6432298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 6585293 - 6585216
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaaca 105  Q
    ||||||||||| |||||||||||| ||||| | |||||  |||  |||||| ||||||| ||| |||||| |||||||    
T  6585293 aacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaaca 6585216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 10614636 - 10614746
Alignment:
Q  28 aacctttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattccta 127  Q
    |||||| |||| |||||||||||||||||| || | ||| ||   || ||||||||||| ||| |||||| ||  ||| ||||||| |||||||| ||||    
T  10614636 aaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgccta 10614735  T
Q  128 atcttacaaca 138  Q
    |||||||||||    
T  10614736 atcttacaaca 10614746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 1516 - 1410
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatct 131  Q
    ||||||| |||||||| ||||||||||||||  || |||  |||||||||| ||| ||||| ||| | ||||||  |||||| ||||||||  |||||||    
T  1516 tttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatttcaaataggtccacagatgaacaccaggctaagttcaaatgtctaatct 1417  T
Q  132 tacaaca 138  Q
    || ||||    
T  1416 tataaca 1410  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 20478134 - 20478100
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctgggg 66  Q
    |||||||||||||||||||||||||| ||||||||    
T  20478134 tttgtatatgacaagttcaacacctccagctgggg 20478100  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 41889606 - 41889500
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaattcctaatct 131  Q
    ||||||||||| |||||||||||||| |  | ||| ||| ||||||||||| ||| ||| |||||| |||||||   || || ||||||||  ||||| |    
T  41889606 tttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatctaatgt 41889507  T
Q  132 tacaaca 138  Q
    |||||||    
T  41889506 tacaaca 41889500  T

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Target: scaffold0295 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 675 - 586
Alignment:
Q  33 ttgtatatgacaagttcaacacctctagctgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaat 122  Q
    |||||| ||||||||| ||||||||||  |  || ||| ||||||| |||| || ||| |||||| |||||||||||||||  |||||||    
T  675 ttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaat 586  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 18315325 - 18315272
Alignment:
Q  32 tttgtatatgacaagttcaacacctctagctgggggactctaaagttcattcca 85  Q
    ||||||| |||||||||||||||||| || | ||| ||| ||||||||||||||    
T  18315325 tttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattcca 18315272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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