View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_high_24 (Length: 333)
Name: NF10092A_high_24
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 3186746 - 3187066
Alignment:
| Q |
1 |
tcaaagagaatcgaaacctcaagagaatcatacgtcaaggtcagaatccaacatcaataaaccaatctaaatggattaacaatatagatatttataacga |
100 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
3186746 |
tcaaagataatcgaaatctcaagagaatcatacttcaaggtcagaatctaacatcaataagccaatctaaatggattaataatatagatatttataacaa |
3186845 |
T |
|
| Q |
101 |
tattttagagattgtgttatttaaaaatattttaagttgtcaaccgaaaacaaactagagtcaaagtaaggctaacaacttagccttgctttgagatatg |
200 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |
|
|
| T |
3186846 |
tattttaaagattgtgttatttaaaaacattttaagttgtcaaccgaaaacaaactagagtcaaagtaaggctaacaacttagtcttactttgagatgtg |
3186945 |
T |
|
| Q |
201 |
actttattgagtcaacttgaggtacaccttaactttatagacatgtgacttgtgactttattgaatccactttaagcacatcttgtgcttaagtgattct |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||| |||| |||| |
|
|
| T |
3186946 |
attttattgagtcaacttgaggtacaccttaactttatagacatgtgacttgtgacttcgttgaatccacatgaagcacatcttatgcttgagtggttct |
3187045 |
T |
|
| Q |
301 |
cataattttttaaaatatatt |
321 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
3187046 |
cataattttttaatatatatt |
3187066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University