View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_high_38 (Length: 257)
Name: NF10092A_high_38
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_high_38 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 2957335 - 2957578
Alignment:
| Q |
11 |
gatgaaccaaattaaggtccgacaattcctctaatatgattatatattgtagagaaagtttatggaaaacatcaatnnnnnnntatgatagaagaagtga |
110 |
Q |
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| T |
2957335 |
gatgaaccaaattaaggttcgacaattcctctaatatgattatatattgcagagaaagtttatggaaaacatcaatgaaaaaatatgatagaagaagtaa |
2957434 |
T |
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| Q |
111 |
ta--atattaannnnnnnnnagtaaatatcaactttatatatactatatagtatttgggttgagtttaactcaagttttataaaacatataacttgtgag |
208 |
Q |
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| T |
2957435 |
tataatattaatttttttt-agtaaatatcaactttatatatactatataatat--gggttgagtttaactcaagttttataaatcata--acttgtgag |
2957529 |
T |
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| Q |
209 |
gtgagcacctgtatccacttctaaacacattattaagatatatctcatt |
257 |
Q |
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| T |
2957530 |
gtgagcacctatatccacttctaaacacattatcaagatatatctcatt |
2957578 |
T |
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