View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_1 (Length: 767)
Name: NF10092A_low_1
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 51376703 - 51376501
Alignment:
| Q |
18 |
gacatcaatgtggtcacaatgcgtatttgataattacaaatttaatgtttgatgctcaaaacttaaagattaatgtcaaatgcttgaaagttaaaaatat |
117 |
Q |
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| T |
51376703 |
gacatcaatgcggtcacaatgcgtatttgataattacaaatttaatgtttgatgctcgaaacttaaagattaatgtcaaatgcttgaaagttaaaaatat |
51376604 |
T |
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| Q |
118 |
gtaccttgcgtattttatcagtttgtctcatttacttgtgatgatgggtaactttgtaaggcgtttaagcctaatgcaatatgccctatatcatctctgg |
217 |
Q |
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| T |
51376603 |
gtaccttgcgtattttatgagtttgtctcatttacttgtgatgatgggtaactttgtaaggcgtttaagcctaatgcaatatgccctatatcatctctgg |
51376504 |
T |
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| Q |
218 |
aat |
220 |
Q |
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||| |
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| T |
51376503 |
aat |
51376501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 244 - 457
Target Start/End: Complemental strand, 51376503 - 51376286
Alignment:
| Q |
244 |
aatctgatttaggcattcaaatttcaatggcttggtaagagaagcttgggtcattggaaagtaaacaaatattatccaaaaagggtggtccatatggctt |
343 |
Q |
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| T |
51376503 |
aatctgatttaggcattcaaatttcaatggcttagtaagagaagcttgggccattggaaagtaaacaaataatatccaaaaagggtggtccatatggctt |
51376404 |
T |
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| Q |
344 |
tggcactggtatc----tttgttgtatccaatggagccattgttcaatggaatagggaaaatgctaggtgggctgtcatgaatgatggagtttatgtatg |
439 |
Q |
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| T |
51376403 |
tggcactggtatcttaatttgttgtatctaatggagccattgttcaatgggatagggaaaatgctaggtgggctgtcatgaatgatggagtttatgtatg |
51376304 |
T |
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| Q |
440 |
ctattctcgtttctgagt |
457 |
Q |
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| T |
51376303 |
ctattctcgtttctgagt |
51376286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 499 - 556
Target Start/End: Complemental strand, 51376286 - 51376229
Alignment:
| Q |
499 |
tcataggtaataggtattgaaggaacacttatgtaaatgactaaaagaggattggaaa |
556 |
Q |
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| T |
51376286 |
tcataggtaataggtattgaaggaacacttctgtaaatgaataaaagaggattggaaa |
51376229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 51850221 - 51850302
Alignment:
| Q |
340 |
gctttggcactggtatctttgttgtatccaatggagccattgttcaatggaata-gggaaaatgctaggtgggctgtcatga |
420 |
Q |
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| T |
51850221 |
gctttgacacttgtatctttgttgtatctaatggagccattgttcaaagggataggggaaaatgctatgtgggctgtcatga |
51850302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 51820671 - 51820752
Alignment:
| Q |
340 |
gctttggcactggtatctttgttgtatccaatggagccattgttcaatggaataggga-aaatgctaggtgggctgtcatga |
420 |
Q |
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| T |
51820671 |
gctttagcactagtatctttgctgtatctaatggaacctttgttcaaagggataggatcaaatgctatgtgggctgtcatga |
51820752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 619
Target Start/End: Original strand, 51821029 - 51821074
Alignment:
| Q |
574 |
cttttaggtaagcctttattccatcatgaaagaaatttgactcttg |
619 |
Q |
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| T |
51821029 |
cttttaggtaagtctttattatatcatgaaagaaaattgactcttg |
51821074 |
T |
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