View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_100 (Length: 311)
Name: NF10092A_low_100
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 53309210 - 53308917
Alignment:
| Q |
3 |
atcaagatgatgatcaccggcgtcgcagtcatccgtgcaatcgacaaacatctggcggagagccttggccagactttggtagctaccgtggttgtgaagg |
102 |
Q |
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| T |
53309210 |
atcaagatgatgatcaccggcgtcgcagtcatccgtgcaatcgacaaacatctggcggagagccttggccagactttggtagctaccgtggttgtgaagg |
53309111 |
T |
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| Q |
103 |
ctgatgcgttggcagatcgaacggccctccaacacagctgtcacagcaggaactacactactagagacaagatcatcatccagctcaagcccatgtgaga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53309110 |
ctgatgcgttggcagatcgaacggccctccaacacaactgtcacagcaggaactacactactagagacaagatcatcatccagctcaagcccatgtgaga |
53309011 |
T |
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| Q |
203 |
gtgtttgaagtttgttgtacttggnnnnnnnattattactggcataaaaattagccaaagatgaagaactagttgaagatgatgcacctatgat |
296 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53309010 |
gtgtttgaagtttgttgtacttggtttttttattattactggcatagaaattagccaaagatgaagaactagttgaagatgatgcacctatgat |
53308917 |
T |
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