View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_101 (Length: 310)

Name: NF10092A_low_101
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_101
NF10092A_low_101
[»] chr1 (16 HSPs)
chr1 (13-308)||(13244622-13244917)
chr1 (13-217)||(12963976-12964180)
chr1 (13-225)||(30368209-30368421)
chr1 (26-216)||(13271474-13271664)
chr1 (13-293)||(13100812-13101091)
chr1 (13-300)||(13080966-13081253)
chr1 (13-225)||(13094278-13094490)
chr1 (13-225)||(13070277-13070489)
chr1 (13-300)||(13085911-13086198)
chr1 (13-295)||(13007009-13007291)
chr1 (13-225)||(13129707-13129919)
chr1 (13-295)||(13204268-13204550)
chr1 (15-225)||(13161400-13161610)
chr1 (13-217)||(19279269-19279473)
chr1 (13-299)||(13065314-13065600)
chr1 (157-216)||(13010661-13010720)
[»] chr7 (1 HSPs)
chr7 (13-171)||(12164206-12164364)
[»] chr6 (5 HSPs)
chr6 (14-100)||(377572-377658)
chr6 (17-100)||(341859-341942)
chr6 (94-185)||(31380253-31380344)
chr6 (14-99)||(346845-346930)
chr6 (14-99)||(355504-355589)
[»] chr8 (1 HSPs)
chr8 (13-42)||(36668187-36668216)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 13244622 - 13244917
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||| || |||| |||||||||||||||||||||||||||    
T  13244622 aatatggggagatgattgcttggaatttaagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaat 13244721  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244722 gcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 13244821  T
Q  213 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataacaaagttg 308  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13244822 gtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttg 13244917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 12963976 - 12964180
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||  ||| |||| || || ||||| ||||||||||| ||||||    
T  12963976 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaat 12964075  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| |||||||||| |||| | ||||||||||    
T  12964076 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaag 12964175  T
Q  213 gtcac 217  Q
    |||||    
T  12964176 gtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 30368209 - 30368421
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||||||||||||| |||||||||||||||| |||||| |||| |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  30368209 aatatggggagaagattgcatggaatttaagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 30368308  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
     |||| |||||||||||||| || |||||| |||| || ||||||||||| |||||||||||| | |||||||||||||||| ||||||||| |||||||    
T  30368309 acaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaag 30368408  T
Q  213 gtcaccctgtaac 225  Q
    |||||||||||||    
T  30368409 gtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 13271664 - 13271474
Alignment:
Q  26 gattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaa 125  Q
    ||||||||||| ||||||||||| ||||||||||| | || ||||   ||| ||||||| || ||||||||||||||||| |||||||||||||||||||    
T  13271664 gattgcttggagtttaagcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaa 13271565  T
Q  126 gttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 216  Q
    | ||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||    
T  13271564 gctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 13101091 - 13100812
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| | || |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13101091 aatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 13100992  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
     |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13100991 -caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaag 13100893  T
Q  213 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcattt 293  Q
    |||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||| || ||| ||||||||||||||    
T  13100892 gtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 13080966 - 13081253
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||| | |||||||   ||| |||| || |||||||| ||||||||||| || |||    
T  13080966 aatatggggagaggattgcttggagtttaagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaat 13081065  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
    |||||||| ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||| |  | ||||  ||||||| ||| |||||||||||||    
T  13081066 gcaggtccaagaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaag 13081165  T
Q  213 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 300  Q
    ||||| |  |||  |  ||   |||||||  |||||||||| |||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  13081166 gtcactcaataattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 13094490 - 13094278
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || |||||||||||||||||||||||     
T  13094490 aatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaac 13094391  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
     |||| || |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| |||||||||||||||||    
T  13094390 acaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaag 13094291  T
Q  213 gtcaccctgtaac 225  Q
    |||||||||||||    
T  13094290 gtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 13070277 - 13070489
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| |||| |  | ||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13070277 aatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaat 13070376  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
     ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13070377 acaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaag 13070476  T
Q  213 gtcaccctgtaac 225  Q
    |||||||||||||    
T  13070477 gtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 13086198 - 13085911
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    |||||||||  | ||| |||| ||||||||||| || ||||||||||| | || ||||   ||| | ||||| || |||| |||||||||||| || |||    
T  13086198 aatatggggtaaggatcgcttcgaatttaagcccgagagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaat 13086099  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||    
T  13086098 gcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaag 13085999  T
Q  213 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 300  Q
    ||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | ||||||||||| |||||||||||    
T  13085998 gtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 13007291 - 13007009
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| | || |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13007291 aatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 13007192  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
     ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||||  ||||||||   ||||||| |||| ||||||||| ||    
T  13007191 acaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcag 13007092  T
Q  213 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 295  Q
    |||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||  || ||| ||||||||||||||||    
T  13007091 gtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 13129919 - 13129707
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || |||||||||||| ||||||||||     
T  13129919 aatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaac 13129820  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
     |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13129819 acaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaag 13129720  T
Q  213 gtcaccctgtaac 225  Q
    |||||||||||||    
T  13129719 gtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 13204550 - 13204268
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| |||| |  | ||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13204550 aatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaat 13204451  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
     ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||| |||| |||| || | |||||||    
T  13204450 acaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaag 13204351  T
Q  213 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 295  Q
    ||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||  || ||| ||||||||||||||||    
T  13204350 gtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 13161610 - 13161400
Alignment:
Q  15 tatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgc 114  Q
    ||||||| ||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || ||||||||||||||| |||||||  |    
T  13161610 tatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacac 13161511  T
Q  115 aggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggt 214  Q
    ||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| |||||||||||||||||||    
T  13161510 aggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggt 13161411  T
Q  215 caccctgtaac 225  Q
    |||| ||||||    
T  13161410 caccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 19279269 - 19279473
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||| || |||||| | ||||||  |||||| ||||||||||||| |||||||   ||| ||||||| || || |||||||||||||| || |||    
T  19279269 aatatggggtgatgattgcctagaatttcggcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaat 19279368  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
    |||||||| ||||| ||| | || ||||||||||  ||  ||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||||    
T  19279369 gcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaag 19279468  T
Q  213 gtcac 217  Q
    |||||    
T  19279469 gtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 13065314 - 13065600
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||||||    || |||   ||| ||||||| |||||||||||||||||||||||||||    
T  13065314 aatatggggagaagactgcatggaatttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaat 13065413  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 212  Q
    ||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  || |  ||||||||||| |||||||  | ||||| |    
T  13065414 gcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatg 13065513  T
Q  213 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatata 299  Q
    |||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||| ||||||||||||||||||||    
T  13065514 gtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttgatata 13065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  157 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 216  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 12164364 - 12164206
Alignment:
Q  13 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 112  Q
    ||||||||||||||||||||||||||||||||| || || ||||| ||    | |||||| || ||  |||| || |||||||||||||| ||||| |||    
T  12164364 aatatggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgcttttaat 12164265  T
Q  113 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgc 171  Q
    || || || || |||||| | || || ||||| |||||  || | ||||||||||||||    
T  12164264 gctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgc 12164206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 377572 - 377658
Alignment:
Q  14 atatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttc 100  Q
    ||||||||||||||||||||||| || ||||| || ||||||||||| |  |||||  ||||||| ||||  |||||||| ||||||    
T  377572 atatggggagaagattgcttggagttcaagccagagagatggatatctgagagaggtagcattgttcatgaaccgtcttataagttc 377658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 341859 - 341942
Alignment:
Q  17 tggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttc 100  Q
    |||||| ||||||||||||| |||||||| || || ||||| || |  ||||||||||||||  |||  |||||||||||||||    
T  341859 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttc 341942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 31380253 - 31380344
Alignment:
Q  94 caagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 185  Q
    |||||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 346930 - 346845
Alignment:
Q  14 atatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagtt 99  Q
    ||||||||| ||||||| ||||| || ||||| || ||||||||||| |  |||||||||||||| |||   || |||||||||||    
T  346930 atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtt 346845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 355589 - 355504
Alignment:
Q  14 atatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagtt 99  Q
    ||||||||| ||||||| ||||| || ||||| || ||||||||||| |  |||||||||||||| |||   || |||||||||||    
T  355589 atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtt 355504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 36668216 - 36668187
Alignment:
Q  13 aatatggggagaagattgcttggaatttaa 42  Q
    ||||||||||||||||||||||||||||||    
T  36668216 aatatggggagaagattgcttggaatttaa 36668187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University