View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_108 (Length: 298)

Name: NF10092A_low_108
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_108
NF10092A_low_108
[»] chr7 (1 HSPs)
chr7 (23-298)||(28550887-28551162)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 23 - 298
Target Start/End: Original strand, 28550887 - 28551162
Alignment:
Q  23 cacatgcaccgtcccaacaaaaaggaaagtgaagtattattgatgtttaaaaattacaaggttcatgccatattaaacacatttcaataaaactgaatta 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28550887 cacatgcaccgtcccaacaaaaaggaaagtgaagtattattgatgtttaaaaatcacaaggttcatgccatattaaacacatttcaataaaactgaatta 28550986  T
Q  123 atgtgctagagactctatctcatcttcacgccaattgcgaatttcctctaagatcccagatggttgtcttgctggatcgttcgtagactcattcttgcac 222  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28550987 atgtgctagagaatctatctcatcttcacgccaattgcgaatttcctctaagatcccagatggttgtcttgttggatcgttcgtagactcattcttgcac 28551086  T
Q  223 ataagacatgatctcttttcacaggtgataatcttacacgagatattcatacggttcaatagattacgatgactcg 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28551087 ataagacatgatctcttttcacaggtgataatcttacacgagatattcatacggttcaatagattacgatgactcg 28551162  T

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