View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_109 (Length: 297)

Name: NF10092A_low_109
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_109
NF10092A_low_109
[»] chr7 (3 HSPs)
chr7 (173-290)||(41430232-41430349)
chr7 (53-138)||(41429951-41430036)
chr7 (1-37)||(41429895-41429931)
[»] chr2 (1 HSPs)
chr2 (174-261)||(29999644-29999731)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 41430232 - 41430349
Alignment:
Q  173 atatccacacaaaagttagctttgcggtacgtttaacacaccttaacctcccaatctaattccagcaattagcgaaatttttgaactaactggaactctg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41430232 atatccacacaaaagttagctttgcggtacgtttaacacaccttaacctcccaatctaattccagcaattagcgaaatttttgaactaactggaaccctg 41430331  T
Q  273 caactccaacaacaccat 290  Q
    ||||||||||||||||||    
T  41430332 caactccaacaacaccat 41430349  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 41429951 - 41430036
Alignment:
Q  53 aaacaaagagggactacgaaaatgtaatatcccaacagaatcaggaaaaagtaatgagttaatatatgagccggagggtgctcata 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41429951 aaacaaagagggactacgaaaatgtaatatcccaacagaatcaggaaaaagtaatgagttaatatatgagccggagggtgctcata 41430036  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41429895 - 41429931
Alignment:
Q  1 aaaaaatataatcttgaaaataccaagctactgattt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  41429895 aaaaaatataatcttgaaaataccaagctactgattt 41429931  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 29999644 - 29999731
Alignment:
Q  174 tatccacacaaaagttagctttgcggtacgtttaacacaccttaacctcccaatctaattccagcaattagcgaaatttttgaactaa 261  Q
    ||||||||||||||||| |||  |||||| | | |||||||||||| |||||||| ||||| |||||||  |||| ||||||||||||    
T  29999644 tatccacacaaaagttaacttcacggtacatgttacacaccttaacttcccaatccaattctagcaattgacgaattttttgaactaa 29999731  T

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