View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_11 (Length: 444)

Name: NF10092A_low_11
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_11
NF10092A_low_11
[»] chr3 (14 HSPs)
chr3 (8-438)||(5484450-5484878)
chr3 (10-256)||(5525676-5525920)
chr3 (8-196)||(5828155-5828344)
chr3 (8-198)||(5502897-5503085)
chr3 (8-198)||(5490083-5490272)
chr3 (8-196)||(5454907-5455095)
chr3 (8-194)||(20343528-20343715)
chr3 (8-174)||(5854185-5854351)
chr3 (27-198)||(5446346-5446517)
chr3 (8-127)||(5848884-5849003)
chr3 (8-128)||(5802487-5802607)
chr3 (250-314)||(5525588-5525652)
chr3 (376-436)||(5525497-5525557)
chr3 (370-438)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (27-198)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 5484878 - 5484450
Alignment:
Q  8 tatcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggca 107  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||| ||||||||||||||||||    
T  5484878 tatcagagatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggca 5484779  T
Q  108 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaact 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||    
T  5484778 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgtgatag--ct 5484681  T
Q  208 ggtactgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgtta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484680 ggtactgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgtta 5484581  T
Q  308 aaaacataaaattacgcggcattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaac 407  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  5484580 aaaacataaaattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacc 5484481  T
Q  408 tacagatcatataaagaatacgagaaacttg 438  Q
    |||||||||||||||||||||||||||||||    
T  5484480 tacagatcatataaagaatacgagaaacttg 5484450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 5525920 - 5525676
Alignment:
Q  10 tcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatc 109  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   |||||||||||||||||||||  |||||||    
T  5525920 tcagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatc 5525821  T
Q  110 ttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactgg 209  Q
    |||||||||||||||||| | |||| |  |||||||||  || |||||| |||||||| ||||  |||||| ||||||||||||||||||||||||||||    
T  5525820 ttcagaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagcac--atttatatatttcatcatttgtgtgatagaactgg 5525723  T
Q  210 tactgataccttaactgtttaattaataggaaaagattacaaaacat 256  Q
     |||| ||||||||| |||||||||||||||| ||||||||||||||    
T  5525722 cactgctaccttaacagtttaattaataggaatagattacaaaacat 5525676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 5828155 - 5828344
Alignment:
Q  8 tatcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggca 107  Q
    |||||||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||| ||||||||   ||||||||||||||||||||| || |||    
T  5828155 tatcagagatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgca 5828254  T
Q  108 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttat-ttcatcatttgt 196  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||  || | |||||||||| ||| |||| |||||||    
T  5828255 tcttccgaacttggtattttcatttccaaagacatattttacctcttcagttagatgcataggacaaatttatatatattcagcatttgt 5828344  T

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Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 5503085 - 5502897
Alignment:
Q  8 tatcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggca 107  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  5503085 tatcagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggca 5502986  T
Q  108 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    |||||||| |||||||||||||||| | |  ||||||||| ||  |||||| |||||||  ||| |||||||  ||||||| |||||||||    
T  5502985 tcttcagagcttggtattttcatttgctattacatattttgtcctttcagttagatata--gcataaatttacatatttcaccatttgtgt 5502897  T

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Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 5490272 - 5490083
Alignment:
Q  8 tatcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggca 107  Q
    ||||| |||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| |||||    
T  5490272 tatcaaagatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca 5490173  T
Q  108 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    ||||||||||||||||||||||||||  |  ||||||||| ||| |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5490172 tcttcagaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgt 5490083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 5455095 - 5454907
Alignment:
Q  8 tatcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggca 107  Q
    ||||||||||| |||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| |||||    
T  5455095 tatcagagatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggca 5454996  T
Q  108 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgt 196  Q
    ||||||||||||||||||||| ||||  |  ||||||||| ||| |||||| |||||||| ||| ||| |||| ||||||| |||||||    
T  5454995 tcttcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgt 5454907  T

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Target: chr3; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 20343715 - 20343528
Alignment:
Q  8 tatcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggca 107  Q
    |||||||||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||  || ||||||||||||||||| |||||||| |||    
T  20343715 tatcagagatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagca 20343616  T
Q  108 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaattt-atttatttcatcattt 194  Q
    ||||||||||||||||||||||||||| |  |||| ||||  || | |||| ||||||||||||||||||| || ||||||| |||||    
T  20343615 tcttcagaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcattt 20343528  T

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Target: chr3; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 5854185 - 5854351
Alignment:
Q  8 tatcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggca 107  Q
    ||||||| ||| ||| || ||||||||||||||||||| ||||||||| || |||||||| ||||| || |||||||||||||||| |||||||||||||    
T  5854185 tatcagatatgttggaagtggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggca 5854284  T
Q  108 tcttcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaa 174  Q
    ||||||||||||||||||| ||||||| |  |||| ||||  || ||||||| ||||||| ||||||    
T  5854285 tcttcagaacttggtatttacatttcctattacatcttttgccttttcagtctgatatatagcacaa 5854351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 5446517 - 5446346
Alignment:
Q  27 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 126  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5446517 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 5446418  T
Q  127 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5446417 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 5446346  T

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Target: chr3; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 5848884 - 5849003
Alignment:
Q  8 tatcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggca 107  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   ||||||||||||||||||||| || |||    
T  5848884 tatcagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgca 5848983  T
Q  108 tcttcagaacttggtatttt 127  Q
    ||||||||||| ||||||||    
T  5848984 tcttcagaactcggtatttt 5849003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 5802487 - 5802607
Alignment:
Q  8 tatcagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggca 107  Q
    |||||| |||||||| || ||||||||||||||||||  ||| ||| ||||||||||||| ||||| ||   ||||||||||||||||||||| || |||    
T  5802487 tatcagggatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgca 5802586  T
Q  108 tcttcagaacttggtattttc 128  Q
    |||||||||||||||||||||    
T  5802587 tcttcagaacttggtattttc 5802607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
Q  250 aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat 314  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||  |||| ||| |||||||    
T  5525652 aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat 5525588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
Q  376 tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact 436  Q
    ||||||||| |||||||||||||||||||| |  ||||||||| |||||||| ||| ||||    
T  5525557 tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact 5525497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
Q  370 cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg 438  Q
    ||||| || |||||| |||||||||||||| ||||| |  ||||||||| |||||||| ||| ||||||    
T  20343390 cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg 20343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 25809295 - 25809466
Alignment:
Q  27 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 126  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809295 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 25809394  T
Q  127 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  25809395 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 25809466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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