View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_110 (Length: 296)

Name: NF10092A_low_110
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_110
NF10092A_low_110
[»] chr8 (1 HSPs)
chr8 (13-296)||(43021148-43021431)
[»] chr4 (1 HSPs)
chr4 (156-296)||(13675644-13675784)
[»] chr6 (1 HSPs)
chr6 (156-296)||(19964935-19965075)
[»] chr3 (2 HSPs)
chr3 (156-258)||(50805724-50805826)
chr3 (156-258)||(50870051-50870153)


Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 43021431 - 43021148
Alignment:
Q  13 atccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatccagagtggggtctgtaaaatagaagcagacacacaaagttggggcccttgtgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43021431 atccaagttaaagtgtaatcaattaatgaaattaaacaaatgaaatgcagagtggggtctgaaaaatagaagcagacacacaaagttggggcccttgtgg 43021332  T
Q  113 aagaatctaaaaaaggtggataggagccaaattatgtttatatgttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaa 212  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43021331 aagaatctaaaaaaggtggataggagccatattatgtttatatgttatattcgtttctgcactactaccattcctcctgcgacttctttatgggaccaaa 43021232  T
Q  213 tctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggctatatatgcccccttcaaaagtatccaaa 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43021231 tctctggcataccaagaagccatataaaactgctagtaaaaatgctatctctggccatatatgcccccttcaaaagtatccaaa 43021148  T

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Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 156 - 296
Target Start/End: Original strand, 13675644 - 13675784
Alignment:
Q  156 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 255  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | |||||||||||||||| |||||||||| |||||| | ||||    
T  13675644 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaattttctggcataccaagaaaccatataaaaatgctagcacaaat 13675743  T
Q  256 gctatctctggctatatatgcccccttcaaaagtatccaaa 296  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  13675744 gctatctctatctatatatgcccccttcaaaagtatccaaa 13675784  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 296
Target Start/End: Complemental strand, 19965075 - 19964935
Alignment:
Q  156 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 255  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | | ||| |||||||||| |||||||||| |||||| | ||||    
T  19965075 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttttgggataccaagaaaccatataaaaatgctagcacaaat 19964976  T
Q  256 gctatctctggctatatatgcccccttcaaaagtatccaaa 296  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  19964975 gctatctctatctatatatgcccccttcaaaagtatccaaa 19964935  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 50805826 - 50805724
Alignment:
Q  156 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 255  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||| |||||||||| |||||| | ||||    
T  50805826 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttctagcataccaagaaaccatataaaaatgctagcacaaat 50805727  T
Q  256 gct 258  Q
    |||    
T  50805726 gct 50805724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 50870051 - 50870153
Alignment:
Q  156 gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat 255  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | | | | |||||||||| |||||||||| |||||| | ||||    
T  50870051 gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaatttttttgtataccaagaaaccatataaaaatgctagcacaaat 50870150  T
Q  256 gct 258  Q
    |||    
T  50870151 gct 50870153  T

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