View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_115 (Length: 292)
Name: NF10092A_low_115
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_115 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 275
Target Start/End: Original strand, 53956598 - 53956867
Alignment:
| Q |
5 |
catataatacttaggatttaattcatatgcatgaaccgtgtaaaaatattttacattgtcattcaatcgtttcgaagtgttagatcatatataacaaaag |
104 |
Q |
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| T |
53956598 |
catataatacttaggatttaattcatatgcatgaaccgtgtaaaaatattttacattgtcattcaatcgttcctaagtgttcgatcatatataacaaaag |
53956697 |
T |
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| Q |
105 |
tttgactttcaacatatctgacttaaaagtcatatagatggttgtttgtgattgatttcttttgtaaaaagctttactatgatagggcataaaatatttc |
204 |
Q |
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| T |
53956698 |
tttgatttttaatatatctgacttaaaagtcatacagatggttgtttgtgattgatttcttttgt-aaaagttttactatgatagggcataaaatatttc |
53956796 |
T |
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| Q |
205 |
tttatttaatactacttaatacttctcctttttaggctatatatggttatactaattgaatggtagtgtgg |
275 |
Q |
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| T |
53956797 |
tctatttaatactacttaatacttctcctttttaggctatatatggttatactaattgaatggtagtgtgg |
53956867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 10513208 - 10513170
Alignment:
| Q |
100 |
aaaagtttgactttcaacatatctgacttaaaagtcata |
138 |
Q |
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| T |
10513208 |
aaaagtttgactttcatcatatctaacttaaaagtcata |
10513170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 4625123 - 4625083
Alignment:
| Q |
19 |
gatttaattcatatgcatgaaccgtgtaaaaatattttaca |
59 |
Q |
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| T |
4625123 |
gatttaattcatatacatcatccgtgtaaaaatattttaca |
4625083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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