View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_117 (Length: 291)
Name: NF10092A_low_117
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_117 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 156 - 284
Target Start/End: Original strand, 13608925 - 13609053
Alignment:
| Q |
156 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattgggaaaattattaaaaagttaacatgcttattgggaaacaaa |
255 |
Q |
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| T |
13608925 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaa |
13609024 |
T |
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| Q |
256 |
acttcaactttacctggcaatattgttgg |
284 |
Q |
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| T |
13609025 |
acttcaactttacctggcaatatagttgg |
13609053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 13608770 - 13608867
Alignment:
| Q |
1 |
acctgtttcattgaacgaataattttcaaggatttgactgaatttttcaattaattacagtagcactttgtcattatatttgatgtttactgtcatga |
98 |
Q |
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| T |
13608770 |
acctgtttcattgaacgaataattttcaaggatttgactgaatttttcaattaattacagtagcactttgtcattatatttgatgtttactgtcatga |
13608867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 158 - 270
Target Start/End: Original strand, 31244876 - 31244988
Alignment:
| Q |
158 |
tgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattgggaaaattattaaaaagttaacatgcttattgggaaacaaaac |
257 |
Q |
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| T |
31244876 |
tgtgatgatttggtatttctatcctctggtcttttaggccacaatatgcagagattggaaaaattattaaagaggtaacatgcttattgagtcacaaatc |
31244975 |
T |
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| Q |
258 |
ttcaactttacct |
270 |
Q |
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| T |
31244976 |
ttcaactttacct |
31244988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 6472799 - 6472683
Alignment:
| Q |
156 |
catgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattgggaaaattattaaaaagttaacatgcttattgggaaacaaa |
255 |
Q |
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|||||||||||||||||||||||| |||||||||| |||| || ||||||| ||||||| ||||||||||||||| ||| | ||||||||||||| || |
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| T |
6472799 |
catgtgatgatttggaatttctattctctggtcttttaggtcacaatatgcggagattgaaaaaattattaaaaaggtaagaagcttattgggaaataag |
6472700 |
T |
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| Q |
256 |
acttcaactttacctgg |
272 |
Q |
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||| ||||||| |||| |
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| T |
6472699 |
actgaaactttaactgg |
6472683 |
T |
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