View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_118 (Length: 289)
Name: NF10092A_low_118
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10092A_low_118 |
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[»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 32650774 - 32650608
Alignment:
Q |
7 |
agcatctcaattcgtttactctttcctttcattaatttgcattatcgccgtgataaatggatcagaattgttctgatatttacacaaatataaacaaacc |
106 |
Q |
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T |
32650774 |
agcatctcaattcgtttactctttcctttcatttattttcattatggccgtgatgaatggatcagaattgttctgatatttacacaaatataaacaaacc |
32650675 |
T |
 |
Q |
107 |
cctcatgaaatgatttcagttaatcattatgattgttcacgttctggtactttttcctttggattcc |
173 |
Q |
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T |
32650674 |
cctcatgaaatgatttcagttaatcattatgattgttcacgttctggtactttttcctttggattcc |
32650608 |
T |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 12537407 - 12537299
Alignment:
Q |
169 |
attcctaacgcccctgatgtt---tactttcttccaaggaagtcttaccacacatttgagaagtccttgccaaaatctgatgtcaactcaggatttttgg |
265 |
Q |
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T |
12537407 |
attcctaacgcccctgatgttgtttactttcttccaaggaagttttaccacacatttgagaagtagttgccaaaatctgatgtcaactcaggttttttgg |
12537308 |
T |
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Q |
266 |
tatgatgtc |
274 |
Q |
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T |
12537307 |
tatgatgtc |
12537299 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0096 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 29175 - 29283
Alignment:
Q |
169 |
attcctaacgcccctgatgtt---tactttcttccaaggaagtcttaccacacatttgagaagtccttgccaaaatctgatgtcaactcaggatttttgg |
265 |
Q |
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T |
29175 |
attcctaacgcccttgatgttgtttactttcttccaaggaagttttaccactcatttgagaagtcgttgccaaaatctgatgtcaactcaggttttttgg |
29274 |
T |
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Q |
266 |
tatgatgtc |
274 |
Q |
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T |
29275 |
tatgatgtc |
29283 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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