View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_124 (Length: 285)
Name: NF10092A_low_124
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_124 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 39932798 - 39932532
Alignment:
| Q |
1 |
tcaaggtattcgaattggacttatcaatcgattcataacttttcaaacacatgtttatttgaactccctttacctgtaggaatatgtcttggatatgtcg |
100 |
Q |
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| T |
39932798 |
tcaaggtattggaattggacttatcaatcgattcataacttttcaaacacatatttattcgaactccctttacctgtaggaatacgtcttggatatgtcg |
39932699 |
T |
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| Q |
101 |
attgtgttatgggcggagtcctattcatggggacatggtagaattgagagaagttgtaggtattatgtcgagtctcttgttgcccctgttaaggaacttg |
200 |
Q |
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| T |
39932698 |
atcgtgttacgggcggagtcctattcatggggacatggtagaattgagagaagttgtaggtattatgtcgagtctcttgttgcccctgttaaggaacttg |
39932599 |
T |
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| Q |
201 |
tcttcactcgagaaatacaacaattaagataaatgtgtcttgatttgaaaatattttctcaatgcat |
267 |
Q |
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| T |
39932598 |
tcttcactcgagaaatgcaacaattaagataaatgtgtcttgatttgaaaatattttcttaatgcat |
39932532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 18148849 - 18148679
Alignment:
| Q |
1 |
tcaaggtattcgaattggacttatcaatcgattcataacttttcaaacaca-----tgtttatttgaactccctttacctgtaggaatatgtcttggata |
95 |
Q |
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| T |
18148849 |
tcaagatattggaattggacttatcaatcgattcataacttttcaaacacaaccaatatttattcgaaccccctttacctgtaggaatacgtcttggatc |
18148750 |
T |
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| Q |
96 |
tgtcgattgtgttatgggcggagtcctattcatggggacatggtagaattgagagaagttgtaggtattat |
166 |
Q |
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| T |
18148749 |
tgccgattgtgttatgggcggagtcctattcatggggacctggtagaattgggagaagctgtaggtattat |
18148679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 49069066 - 49069112
Alignment:
| Q |
99 |
cgattgtgttatgggcggagtcctattcatggggacatggtagaatt |
145 |
Q |
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| T |
49069066 |
cgattatgttatgggcggagtcctattcatggggacctggtagaatt |
49069112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34210332 - 34210368
Alignment:
| Q |
1 |
tcaaggtattcgaattggacttatcaatcgattcata |
37 |
Q |
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| T |
34210332 |
tcaagatattggaattggacttatcaatcgattcata |
34210368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12952823 - 12952873
Alignment:
| Q |
1 |
tcaaggtattcgaattggacttatcaatcgattcataacttttcaaacaca |
51 |
Q |
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| T |
12952823 |
tcaagatattggaattggacttatcaatcgattcataacttttcaaacaca |
12952873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 2363376 - 2363420
Alignment:
| Q |
7 |
tattcgaattggacttatcaatcgattcataacttttcaaacaca |
51 |
Q |
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| T |
2363376 |
tattggaattggacttatcaatcagttcatagcttttcaaacaca |
2363420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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