View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_127 (Length: 282)
Name: NF10092A_low_127
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_127 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0634 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 10127377 - 10127629
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10127377 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcatggtttcaactctttga |
10127476 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaata |
207 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10127477 |
atgaccaaataaagtgttaatttaagaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaatgggattggtgattaaatataaata |
10127576 |
T |
|
| Q |
208 |
aaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
10127577 |
aaggaatttaattagaactagacataagggaattgaaacttgcaagttaaacc |
10127629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 11543624 - 11543876
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttg |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
11543624 |
caattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttg |
11543723 |
T |
|
| Q |
107 |
aatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagt-aaagggattggtgattaaatataaa |
205 |
Q |
| |
|
||||||||||||||||||||| |||||| || ||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
11543724 |
aatgatcaaacaaagtgttaacttaggagaaagaatattaatcacgaatgaccaaacggattaatagttttagtaaaagggattggtgattgaatgaaaa |
11543823 |
T |
|
| Q |
206 |
taaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
| |||||||| ||||||||||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
11543824 |
t--aggaatttgattagaactagacattagggaatcgaaacttgcaattgaaacc |
11543876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 21432245 - 21431995
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttga |
107 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||||| | |||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
21432245 |
caattgagattagaattattgcatgatcaaatcttaattgtagtcttccaatcattcaaccttttcacgcttcatgcttttcttggtttcaactctttga |
21432146 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaata |
207 |
Q |
| |
|
|||| ||||||||||||||| |||||| || ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
21432145 |
atgaccaaacaaagtgttaacttaggagaaagaatattaatcacgaatgaccaaacaaattaatagttttagtaaagggattggtgattgaataaaaat- |
21432047 |
T |
|
| Q |
208 |
aaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
21432046 |
-aggaatttgattagaactagacattagggaatcgaaacttgcaagtgaaacc |
21431995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 16139518 - 16139265
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttc-ttggtttcaactctttg |
106 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| || ||| ||||||||| |
|
|
| T |
16139518 |
caattgagactagcattattgcatgatcaaaccttaattttagtcttccaatcattcaacctttttacactttatgcttttctttaatttgaactctttg |
16139419 |
T |
|
| Q |
107 |
aatgatcaaacaaagtgttaatttagg--aaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataa |
204 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||||| ||| ||||| |||| ||||||||||||||||| ||||||||||||||| |||| || |
|
|
| T |
16139418 |
catgatcaaacaaagtgttaatttaagaaaaaaagaatattaaccacgaatgaccaaatggattaatagttttagttaagggattggtgattgaataaaa |
16139319 |
T |
|
| Q |
205 |
ataaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
16139318 |
at--aggaatttaattagaactagacataaaggaatcaaaacttgcaagtgaaacc |
16139265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 27611621 - 27611872
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttga |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
27611621 |
caattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaaccttttcgcgctttatgcttttcttggtttcaactctttga |
27611720 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaata |
207 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | |||| ||||| |
|
|
| T |
27611721 |
atgaccaaacaaagtgttaatttaagaaaaagaatattaatcacgaatgaccaaacggattaatagttttagtaaagggattggtga-tgaataaaaata |
27611819 |
T |
|
| Q |
208 |
aaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
27611820 |
aaggaattgaattagaactagacattagggaatcgaaacttgcaagtgaaacc |
27611872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 10890128 - 10890379
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttg |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
10890128 |
caattgagactagaattattgcatgatcaaaccttagttttagtcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttg |
10890227 |
T |
|
| Q |
107 |
aatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaat |
206 |
Q |
| |
|
||||||||||| ||||||||| |||||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
10890228 |
aatgatcaaacgaagtgttaacttaggagaaagaatattaatcacgaatgaccaaacggattaatagttttagtaaagggattggtgattgaatgaaaat |
10890327 |
T |
|
| Q |
207 |
aaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
10890328 |
--aggaatttgattagaactagacattagggaatcgaaacttgcaagtgaaacc |
10890379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 22406295 - 22406046
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttga |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||| |
|
|
| T |
22406295 |
caattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaaccttttcgcgcttcatgcttttcttggtttcaactctttga |
22406196 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaata |
207 |
Q |
| |
|
|||| ||||||||||||||| |||||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
22406195 |
atgaccaaacaaagtgttaacttaggagaaagaatattaatcacgaatgaccaaacggattaatagttttagtaaagggattggtgattgaataaaaat- |
22406097 |
T |
|
| Q |
208 |
aaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
22406096 |
-aggaatttgattagaactagaca-aaaggaatcgaaacttgcaagtgaaacc |
22406046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 23164873 - 23164631
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttg |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
23164873 |
caattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttg |
23164774 |
T |
|
| Q |
107 |
aatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaat |
206 |
Q |
| |
|
||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||| |
|
|
| T |
23164773 |
aatgaccaaacaaagtgttaacttaggagaaagaatattaatcacaaatgatcaaacagattaatag---------cgggattggtgattgaataaaaat |
23164683 |
T |
|
| Q |
207 |
aaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
23164682 |
--aggaatttgattagaactagacataaaggaatccaaacttgcaagtgaaacc |
23164631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 23576130 - 23575888
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttg |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
23576130 |
caattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttg |
23576031 |
T |
|
| Q |
107 |
aatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaat |
206 |
Q |
| |
|
||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||| |
|
|
| T |
23576030 |
aatgaccaaacaaagtgttaacttaggagaaagaatattaatcacaaatgatcaaacagattaatag---------cgggattggtgattgaataaaaat |
23575940 |
T |
|
| Q |
207 |
aaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
23575939 |
--aggaatttgattagaactagacataaaggaatccaaacttgcaagtgaaacc |
23575888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 260
Target Start/End: Original strand, 11009834 - 11009939
Alignment:
| Q |
153 |
aatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggggaattgaaacttgcaa |
252 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||||| | | ||||| |||||||||| |
|
|
| T |
11009834 |
aatgaccaaacagattaatagttttagtaaagggattggtgattgaataaaaat--aggaatttgattagaactagaaaaaaaggaatcaaaacttgcaa |
11009931 |
T |
|
| Q |
253 |
gtgaaacc |
260 |
Q |
| |
|
|||||||| |
|
|
| T |
11009932 |
gtgaaacc |
11009939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 11767589 - 11767517
Alignment:
| Q |
16 |
actagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgctttt |
88 |
Q |
| |
|
||||| |||||||||| | |||||||||| ||||||||||||| ||||||| ||||| | |||||||||||| |
|
|
| T |
11767589 |
actaggatttttgcataaccaaaccttaattttagtcttccaaacattcaaactttttatactttatgctttt |
11767517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 14277017 - 14276767
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttga |
107 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
14277017 |
caattgagactacaattattgcatgatcaaaccttaattttagtcttccaatcattcaaccttttcgtgctttgtgcttttcttggtttcaactctttga |
14276918 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaata |
207 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
14276917 |
atgaccaaacaaagtgttaatttaagaaaaagaatattaatcacgaatgaccaaacggattaatagttttagtaaagggattggtgattgaataaaaat- |
14276819 |
T |
|
| Q |
208 |
aaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
14276818 |
-aggaatttgattagaactagacaaaaaggaatcgaaacttgcaagtgaaacc |
14276767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 37470664 - 37470419
Alignment:
| Q |
12 |
tgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttgaatga |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||||||| ||||||| |||||| |||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37470664 |
tgagactagaattattgcatgatcaaaccttgattttagtcgtccaatcgttcaaccttttcgcgctttatgcttttcttggtttcaactctttgaatga |
37470565 |
T |
|
| Q |
112 |
tcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaagg |
211 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||| ||| |
|
|
| T |
37470564 |
ccaaacaaagtgttaaattaagaaaaagaatattaatcacgaatgaccaaacggattaatagttttagtaaagggattggtgattgaataaaaat--agg |
37470467 |
T |
|
| Q |
212 |
aatttaattagaactagacataggggaattgaaacttgcaagtgaaac |
259 |
Q |
| |
|
||||| |||||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
37470466 |
aatttgattagaactagacaaaaaggaatcgaaacttgcaagtgaaac |
37470419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 45279461 - 45279710
Alignment:
| Q |
9 |
aattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttga |
107 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| ||||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45279461 |
aattgagattagaattattgcatgatcaaaccttaattttagtctttcagtcattcaacctttttgtgctttatgcttttcttgagtttcaactctttga |
45279560 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaata |
207 |
Q |
| |
|
|||| |||||||||||||| ||||||||| ||||||||||||| ||||| || | ||||||||||||||| | ||||||||||||||| |||| ||||| |
|
|
| T |
45279561 |
atgacaaaacaaagtgttaacttaggaaaaagaatattaatcacgaatgaccagatggattaatagttttact-aagggattggtgattgaataaaaata |
45279659 |
T |
|
| Q |
208 |
aaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaa |
258 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
45279660 |
aaggaattgaattagaactagacattagggaatcgaaacttgcaagtgaaa |
45279710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 1686166 - 1686199
Alignment:
| Q |
11 |
ttgagactagaatttttgcatgatcaaaccttaa |
44 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
1686166 |
ttgagactagaattattgcatgatcaaaccttaa |
1686199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 4202 - 3951
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttg |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
4202 |
caattgagactagaattattgcatgatcaaaccttaattttaatcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttg |
4103 |
T |
|
| Q |
107 |
aatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaat |
206 |
Q |
| |
|
||||||||||||||||||||| |||||| || ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
4102 |
aatgatcaaacaaagtgttaacttaggagaaagaatattaatcacgaatgaccaaacagattaatagttttagtaaagggattggtgattgaataaaaat |
4003 |
T |
|
| Q |
207 |
aaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
4002 |
--aggaatttgattagaactagacattagggaatcgaaacttgcaagtgaaacc |
3951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 8050 - 7800
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttga |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||| |
|
|
| T |
8050 |
caattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaaccttttcgcgcttcatgcttttcttggtttcaactctttga |
7951 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaata |
207 |
Q |
| |
|
|||| ||||||||||||||| |||||| || ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
7950 |
atgaccaaacaaagtgttaacttaggagaaagaatattaatcacgaatgaccaaacggattagtagttttagtaaagggattggtgattgaataaaaat- |
7852 |
T |
|
| Q |
208 |
aaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
7851 |
-aggaatttgattagaactagacattagggaatcgaaacttgcaagtgaaacc |
7800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 10889765 - 10889512
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttg |
106 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
10889765 |
caattgagactagaattattgcatgatgaaaccttaattttagtcttccaatcattcaaccttttcgtgctttatgcttttcttgagtttcaactctttg |
10889666 |
T |
|
| Q |
107 |
aatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaat |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||| ||||||||||||||| ||||| ||||||||| |||| |||| |
|
|
| T |
10889665 |
catgatcaaacaaagtgttaatttaagaaaaagaatattaatcacgaatgaccaaacaaattaatagttttagttaagggtttggtgattgaataaaaat |
10889566 |
T |
|
| Q |
207 |
aaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
10889565 |
aaaggaatttaattagaactagacataaaggaatcaaaacttgcaagtgaaacc |
10889512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 31962296 - 31962539
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttg |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31962296 |
caattgagactagaattattgcatgatcaaaccttaattttagtcttccagtcattcaacctttttgtgctttatgcttttcttgagtttcaactctttg |
31962395 |
T |
|
| Q |
107 |
aatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaat |
206 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
31962396 |
aatgaccaaacaaagtgttaacttaggaaaaagaatattaatcacgaa----------gattaatagttttactaaagggattggtgattgaataaaaat |
31962485 |
T |
|
| Q |
207 |
aaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
31962486 |
aaaggaattgaattagaactagacattagggaatcaaaacttgcaagtgaaacc |
31962539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 23616346 - 23616611
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttgg-tttcaactctttg |
106 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
23616346 |
caatttagactagaattattgcatgatcaaaccttaattttagtcttccaatctttcaatctttttacactttatgcttttcttgaatttgaactctttg |
23616445 |
T |
|
| Q |
107 |
aatgatcaaac-----------aaagtgttaa---tttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggt |
192 |
Q |
| |
|
||||||||| ||| | || | |||||||||| ||||||||| ||| ||||| ||||||||||||||||||||||||| |||||| | |
|
|
| T |
23616446 |
catgatcaaaaccctaaaccctaaactctttacactttaggaaaaagaatattaaccacgaatgaccaaacggattaatagttttagtaaatggattgat |
23616545 |
T |
|
| Q |
193 |
gattaaatataaataaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||| |||| |||| || |||||||||||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
23616546 |
gattgaataaaaat--agaaatttaattagaactagacataaagtaatcaaaacttgcaagtgaaacc |
23616611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 119636 - 119885
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttg-gtttcaactctttg |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
119636 |
caattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaacctttttgttctttatgcttttcttgagtttcaactctttg |
119735 |
T |
|
| Q |
107 |
aatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaat |
206 |
Q |
| |
|
||||||||||| ||||||||| |||||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
119736 |
aatgatcaaacgaagtgttaacttaggagaaagaatattaatcacgaatgaccaaacggattaatagttttagtaaagggattggtgattgaatgaaaat |
119835 |
T |
|
| Q |
207 |
aaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaa |
258 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
119836 |
--aggaatttgattagaactagacattagggaatcgaaacttgcaagtgaaa |
119885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 17342415 - 17342665
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttga |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
17342415 |
caattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaaccttttcgcgctttatgcttttcttggtttcaactctttga |
17342514 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaata |
207 |
Q |
| |
|
|||| ||||||||||||||| |||||| || |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
17342515 |
atgaccaaacaaagtgttaacttaggagaaagaatattaatcatgaatgaccaaacggattaatagttatagtaaagggattggtgattgaataaaaat- |
17342613 |
T |
|
| Q |
208 |
aaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
17342614 |
-aggaatttaaatagaactagacataaaagaatccaaacttgcaagtgaaacc |
17342665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 7728191 - 7727941
Alignment:
| Q |
9 |
aattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttctt-ggtttcaactctttga |
107 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |||| ||||||||||||||||| |||| | |||||| |||||||| |||||||||||||| |
|
|
| T |
7728191 |
aattgagagaagaattattgcatgatcaaaccttagttttactcttccaatcattcaacattttcgcactttatacttttcttaaatttcaactctttga |
7728092 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaata |
207 |
Q |
| |
|
||| |||||||| |||||| || |||||| ||||| | ||||| ||||| ||||| | | | |||||||||||||||||| |||||||||| ||| | |
|
|
| T |
7728091 |
atggccaaacaaaatgttaacttgggaaaaagaataat-atcaccaatgaccaaac-aagttagagttttagtaaagggattaatgattaaataaaaaca |
7727994 |
T |
|
| Q |
208 |
aaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
|
||||||||||| |||||||||| || |||||| || ||||||||||||||| |
|
|
| T |
7727993 |
aaggaatttaagtagaactagatctaagggaatcaaatcttgcaagtgaaacc |
7727941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 13812975 - 13812868
Alignment:
| Q |
153 |
aatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaactagacataggggaattgaaacttgcaa |
252 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||| ||||||||||| |||| ||||||||||||| |||||||||||||||| |||||| |||| |||||| |
|
|
| T |
13812975 |
aatgaccaaacagattaatagttttactaaagtgattggtgattgaataaaaataaaggaattgaattagaactagacattagggaatcgaaaattgcaa |
13812876 |
T |
|
| Q |
253 |
gtgaaacc |
260 |
Q |
| |
|
|||||||| |
|
|
| T |
13812875 |
gtgaaacc |
13812868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 13813050 - 13812976
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttat |
82 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
13813050 |
caattgagactagaattattacatgatcaaaccttaattttagtcttccagtcattcaacctttttgtgctttat |
13812976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 27163337 - 27163215
Alignment:
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaag-gaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaat |
206 |
Q |
| |
|
|||| |||||| | ||||||||||| |||| |||||||||| | ||||||||||| |||||||||||| ||||||||||| | || |||| |||| |
|
|
| T |
27163337 |
atgaccaaacacaatgttaatttagaaaaaaagaatattaattaagaatgatcaaacaaattaatagtttttgtaaagggattcgagaccgaataaaaat |
27163238 |
T |
|
| Q |
207 |
aaaggaatttaattagaactaga |
229 |
Q |
| |
|
||||||||||| |||||| |||| |
|
|
| T |
27163237 |
aaaggaatttatttagaattaga |
27163215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 21932 - 22106
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttga |
107 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
21932 |
caattgagactagaattattgcatgatcaaaccttaattttagtcttccaatcattcaaccttttcgcgctttatgcttttcttggtttcatctctttga |
22031 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaa |
182 |
Q |
| |
|
|||| ||||||||||||||| |||||| || |||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
22032 |
atgaccaaacaaagtgttaacttaggagaaagaatattaatcatgaatgaccaaacggattaatagttttagtaa |
22106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 26115662 - 26115898
Alignment:
| Q |
8 |
caattgagactagaatttttgcatgatcaaaccttaagtttagtcttccaatcattcaacttttttgtgctttatgcttttcttggtttcaactctttga |
107 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||| || |
|
|
| T |
26115662 |
caattgagactagaattattgcaggatcaaaccttaattttagtcctccaatcattcaacctttttacactttatgcttttctt-------------tgc |
26115748 |
T |
|
| Q |
108 |
atgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaata |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
26115749 |
atgatcaaacatagtgttaatttaggaaagagaatattaatcacgaatgaccaaacggattaatagttttagtaaagagattggtgattgaatataaat- |
26115847 |
T |
|
| Q |
208 |
aaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaac |
259 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
26115848 |
-aggaatttaattagaactagacataaagaaatcaaaacttgcaagtgaaac |
26115898 |
T |
|
Back To:
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Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 48180396 - 48180222
Alignment:
| Q |
49 |
agtcttccaatcattcaacttttttgtgctttatgcttttcttgg-tttcaactctttgaatgatcaaacaaagtgttaatttaggaaaaggaatattaa |
147 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||| ||| ||||| |
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|
| T |
48180396 |
agtcttccaatcattcaaccttttta--ctatatgcttttcttgaatttgaactctttgcatgatcaaacaaagtgttaattcaggaaaaagaagattaa |
48180299 |
T |
|
| Q |
148 |
tcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaataaaggaatttaattagaa |
224 |
Q |
| |
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|||||||| | ||||| ||||||||||||||||||||||||| ||||| |||| |||||||||||||||| ||||| |
|
|
| T |
48180298 |
tcacaaataaccaaacatattaatagttttagtaaagggattgatgattgaataaaaataaaggaatttaagtagaa |
48180222 |
T |
|
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Target: scaffold0634 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0634
Description:
Target: scaffold0634; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 260
Target Start/End: Original strand, 3747 - 3890
Alignment:
| Q |
106 |
gaatgatcaaacaaagtgttaatttaggaaaaggaatattaatcacaaatgatcaaacggattaatagttttagtaaagggattggtgattaaatataaa |
205 |
Q |
| |
|
|||||| ||||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||| |
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|
| T |
3747 |
gaatgaccaaacaaagtgttaacttaggagaaagaatattaatcacaaatgatcaaacagattaatag---------cgggattggtgattgaataaaaa |
3837 |
T |
|
| Q |
206 |
taaaggaatttaattagaactagacataggggaattgaaacttgcaagtgaaacc |
260 |
Q |
| |
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| |||||||| |||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
3838 |
t--aggaatttgattagaactagacataaaggaatccaaacttgcaagtgaaacc |
3890 |
T |
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