View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_135 (Length: 277)
Name: NF10092A_low_135
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_135 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 5251170 - 5251406
Alignment:
| Q |
7 |
tttggtgttgatgttggattttatatataaaatgtttatttgctgaaagcacaaaaaacaagtgttacagcataagaatagtggtttttgtcnnnnnnnn |
106 |
Q |
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| T |
5251170 |
tttggtgttgatgttggattttatatataaaatgtttctttgcagaaagcacaaaaaacaagtgttacaacataagaatagtggtttttg---ataaaaa |
5251266 |
T |
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| Q |
107 |
nnnnnnnnnnncataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaagataagtgtataatgcaaacaattttaacaaacaggt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5251267 |
ataataaaataaataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaa----------ataatgcaaacaattttaacaaacaggt |
5251356 |
T |
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| Q |
207 |
tcatccatgataattttaaaacaatcgnnnnnnntatacaaaggaatgaa |
256 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5251357 |
tcatccatgataattttaaaacaatcgaaaaaaatatacaaaggaatgaa |
5251406 |
T |
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