View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_136 (Length: 276)
Name: NF10092A_low_136
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_136 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 7713609 - 7713354
Alignment:
| Q |
8 |
aagttatccggtgctattccggcgtcgctcggcaacctacagtctctttcgaagttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggt |
107 |
Q |
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| T |
7713609 |
aagttatccggtgctattccggcgtcgctcgacaacctacagtctctttcgcagttcaatgttagctttaaccagctctgtggtgcgatccctactgggt |
7713510 |
T |
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| Q |
108 |
tgagcaagtttgcaaagagttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggcctagctagcagcaagtaaatcaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7713509 |
tgagcaagtttgcaaagagttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggcctagctagcaccaagtaaatcaa |
7713410 |
T |
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| Q |
208 |
agaagtataaatgagtcattatgtgaccattttatttccttaaaataatgttatat |
263 |
Q |
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| T |
7713409 |
agaagtataaatgagtcattatgtgaccattttatttccttaaaataatgttatat |
7713354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 7727125 - 7726878
Alignment:
| Q |
9 |
agttatccggtgctattccggcgtcgctcggcaacctacagtctctttcgaagttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggtt |
108 |
Q |
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| T |
7727125 |
agttatccggtgttattcccgcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgcgatacctactgggtt |
7727026 |
T |
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| Q |
109 |
gagcaagtttgcaaagagttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggcctagctagcagcaagtaaatcaaa |
208 |
Q |
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| T |
7727025 |
gaacaagtttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcctttagcagcttgcaagtgaggc----ctaccagcaagtaaataaaa |
7726930 |
T |
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| Q |
209 |
gaagtataaatgagtcattatgtgaccattttatttccttaaaataatgtta |
260 |
Q |
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| | |||| ||||||||| ||||| | ||||||||| ||||||||||||| |
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| T |
7726929 |
gtaatatatttgagtcattgtgtgaaaactttatttccctaaaataatgtta |
7726878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 7731285 - 7731107
Alignment:
| Q |
9 |
agttatccggtgctattccggcgtcgctcggcaacctacagtctctttcgaagttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggtt |
108 |
Q |
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| T |
7731285 |
agttatccggtgttattccggcgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgctatccctactggatt |
7731186 |
T |
|
| Q |
109 |
gagcaagtttgcaaagagttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggccta |
187 |
Q |
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| T |
7731185 |
gagcaagtttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcctttagcagcttgcaagtgaggccta |
7731107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 7739444 - 7739198
Alignment:
| Q |
8 |
aagttatccggtgctattccggcgtcgctcggcaacctacagtctctttcgaagttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggt |
107 |
Q |
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|||||| |||||| ||||||||||||| ||||| ||||| ||||||||| |||| || |||||||||||||| ||||||||||| ||||||||||| | |
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| T |
7739444 |
aagttaaccggtgttattccggcgtcgttcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgctatccctactggat |
7739345 |
T |
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| Q |
108 |
tgagcaagtttgcaaagagttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggcctagctagcagcaagtaaatcaa |
207 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| || |||||||| | |||||||| || || |
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| T |
7739344 |
tgagcaaatttgcaaagagttcgtttgatcataataaatgcctttgtggtgctcctttagcagcttgctagtgaggcctacc----agcaagtatataaa |
7739249 |
T |
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| Q |
208 |
agaagtataaatgagtcattatgtgaccattttatttccttaaaataatgtt |
259 |
Q |
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| || |||| ||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
7739248 |
ataa-tatatttgagtcattgtgtgacaattttatttccctaaaataatgtt |
7739198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 7699264 - 7699015
Alignment:
| Q |
8 |
aagttatccggtgctattccggcgtcgctcggcaacctacagtctctttcgaagttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggt |
107 |
Q |
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||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||| ||||| |||||||||||||| |||||||| || ||| |||||| |
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| T |
7699264 |
aagttatccggcactattccggcgtcactcggcaacctacaatctctttcgcagtttaatgttagctttaaccagctctgtggtgcaattcctgctgggt |
7699165 |
T |
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| Q |
108 |
tgagcaagtttgcaaagagttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggcctagctagcagcaagtaaatcaa |
207 |
Q |
| |
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||| |||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||||| || || ||| |||||||||||| || |
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| T |
7699164 |
tgaagaagtttaacaagaatgtgtttgagcataataaatgcctttgtggtgctcctttagcaccttgcaagtgaagc----ctaccagcaagtaaataaa |
7699069 |
T |
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| Q |
208 |
agaagtataaatgagtcattatgtgaccattttatttccttaaaataatgttat |
261 |
Q |
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|| ||||||| |||||| || | |||| | |||||||||||||||||||||||| |
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| T |
7699068 |
aggagtataattgagtctttgtatgactactttatttccttaaaataatgttat |
7699015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 7750235 - 7750193
Alignment:
| Q |
137 |
cataataaatgcctttgtgatgctcctttagcaccttgcaagg |
179 |
Q |
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| T |
7750235 |
cataataaatgcctttgtggtgctcctttatcaccttgcaagg |
7750193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 7731035 - 7730997
Alignment:
| Q |
219 |
tgagtcattatgtgaccattttatttccttaaaataatg |
257 |
Q |
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| T |
7731035 |
tgagtcattatgtgacaattttatttccataaaataatg |
7730997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 12908210 - 12908389
Alignment:
| Q |
8 |
aagttatccggtgctattccggcgtcgctcggcaacctacagtctctttcgaagttcaatgtcagctttaaccagctgtgtggtgcgatccctactgggt |
107 |
Q |
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||||||||||||| |||||| |||||||||| || ||||| |||||| || |||| ||||| |||| |||||| |||||||||||||| |||||||||| |
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| T |
12908210 |
aagttatccggtgttattccagcgtcgctcgccaccctaccgtctctctcccagttgaatgttagctctaaccatctgtgtggtgcgatacctactgggt |
12908309 |
T |
|
| Q |
108 |
tgagcaagtttgcaaagagttcgtttgagcataataaatgcctttgtgatgctcctttagcaccttgcaagggaggccta |
187 |
Q |
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||| ||||| | |||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||| |||||||| |
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| T |
12908310 |
tgaagaagttggagaagagtatgtttgagcataataaatgcctttgtggtgcacctttagcagcttgcaagtgaggccta |
12908389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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