View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_137 (Length: 276)
Name: NF10092A_low_137
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_137 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 29100845 - 29101105
Alignment:
| Q |
5 |
gtagtagattatcttttcaggatgacttggatgatggtgacttttcgtgtccttttgatgttgatgatgttgaccctcccaatgttctgtcaaggtactt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29100845 |
gtagtagattatcttttcaggatgacttggatgatggtgacttttcgtgtccttttgatgttgatgatgttgaccctcccaatgttctgtcaaggtactt |
29100944 |
T |
|
| Q |
105 |
tgtggaaatatctt-attgtaaactcttctacgataagcgctcaattaaattgtttatacaaattccacataaatgataaatctccatttatgatctatc |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29100945 |
tgtggaaatatctttattgtaaactcttctacgataagcgctcaattaaattgtttatacaaattccacataaatgataaatctccatttatgatctatc |
29101044 |
T |
|
| Q |
204 |
aagtttagttatgaatataaagtttgtcgatactagtagtcagtgatatgatatctatatt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29101045 |
aagtttagttatgaatataaagtttgtcgatactagtagtcagtgatatgatatctatatt |
29101105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University