View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_140 (Length: 269)

Name: NF10092A_low_140
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_140
NF10092A_low_140
[»] chr8 (13 HSPs)
chr8 (17-266)||(3398564-3398813)
chr8 (7-263)||(3391583-3391839)
chr8 (23-263)||(3364083-3364323)
chr8 (7-263)||(3407370-3407626)
chr8 (7-263)||(31175745-31176001)
chr8 (19-263)||(3314768-3315012)
chr8 (23-263)||(3286562-3286802)
chr8 (20-254)||(3262682-3262916)
chr8 (34-164)||(3375003-3375133)
chr8 (25-263)||(3325047-3325285)
chr8 (7-164)||(13808603-13808760)
chr8 (22-164)||(7164798-7164941)
chr8 (16-263)||(3267245-3267492)
[»] chr5 (5 HSPs)
chr5 (7-263)||(20838530-20838786)
chr5 (7-263)||(20812175-20812431)
chr5 (16-263)||(15802818-15803065)
chr5 (16-182)||(12599180-12599346)
chr5 (16-260)||(30417727-30417971)
[»] chr3 (6 HSPs)
chr3 (16-263)||(6905853-6906100)
chr3 (16-263)||(32411130-32411374)
chr3 (88-134)||(47986908-47986954)
chr3 (88-134)||(47996195-47996241)
chr3 (88-134)||(48005482-48005528)
chr3 (88-134)||(48014767-48014813)
[»] scaffold0468 (1 HSPs)
scaffold0468 (7-263)||(6193-6449)
[»] chr2 (1 HSPs)
chr2 (7-264)||(14766993-14767250)
[»] chr7 (2 HSPs)
chr7 (7-162)||(8371807-8371962)
chr7 (88-134)||(36213885-36213931)
[»] chr6 (9 HSPs)
chr6 (86-134)||(5447564-5447612)
chr6 (88-134)||(5344840-5344886)
chr6 (86-155)||(5383303-5383372)
chr6 (89-138)||(5396930-5396979)
chr6 (86-134)||(5128473-5128521)
chr6 (86-174)||(5425887-5425975)
chr6 (86-134)||(5447134-5447182)
chr6 (67-134)||(5181983-5182050)
chr6 (86-134)||(5434012-5434060)
[»] chr4 (2 HSPs)
chr4 (86-133)||(4133480-4133527)
chr4 (86-134)||(4335322-4335370)
[»] scaffold0294 (1 HSPs)
scaffold0294 (86-134)||(8956-9004)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 3398813 - 3398564
Alignment:
Q  17 ttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||| |||    
T  3398813 ttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcaattgaaatcagtgaaaactctcattatttctggttgttcaaa 3398714  T
Q  117 gattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  3398713 gattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagcaaatactggtgtcaaacaagttcctttttcgattgttaga 3398614  T
Q  217 tcaaaaagcattgcgtatatatctctatgtggatatgaaggattatcgtc 266  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  3398613 tcaaaaagcattgcatatatatctctatgtggatataaaggattatcgtc 3398564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 3391839 - 3391583
Alignment:
Q  7 aagaatatccttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctg 106  Q
    |||||| | |||||| ||||||||| ||||||||| ||||||  |||||||||||||||||||||||| |||| | ||||| ||||||| || |||||||    
T  3391839 aagaatcttcttctgttaaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtggaaactctcatcctttctg 3391740  T
Q  107 gttgtttaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttc 206  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||   || |||||    
T  3391739 gttgttcaaagattgacaaattggaagaagatatagtgcaaatggaatccttgacaactctaatggcagcaaatactggagtcaaacaaccaccattttc 3391640  T
Q  207 gattgttagatcaaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
    ||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  3391639 gatagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatc 3391583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 3364083 - 3364323
Alignment:
Q  23 taaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaaagattga 122  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||| |  |||| ||||||| || ||||||||||||| |||||||||    
T  3364083 taaatttgaaggactgtacgagtcttggcaatctcccaagagagatctatcaattgagaagagtggaaactctcatcctttctggttgttcaaagattga 3364182  T
Q  123 caaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttagatcaaaa 222  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||   || |||||||| || |||||||||    
T  3364183 caaattggaagaagatatagtgcaaatggaatccttgacaactctaatggcagcaaatactggagtcaaacaaccaccattttcgatagtgagatcaaaa 3364282  T
Q  223 agcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  3364283 agcattggatatatatctctatgtggatatgaaggattatc 3364323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 3407626 - 3407370
Alignment:
Q  7 aagaatatccttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctg 106  Q
    |||||| | ||||| |||||||||| ||| ||| |||||||||  ||||||||||||||||||||||  |||| ||||||||||||||| || |||||||    
T  3407626 aagaatcttcttctcataaatttgaaggattgtgcaagtcttgttaatctcccaagagagatctatcgattgagatcagtgaaaactctcatcctttctg 3407527  T
Q  107 gttgtttaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttc 206  Q
    |||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||    
T  3407526 gttgttcaaagattgtcaaattggaagaagatatagtgcaaatgaaatccttgacaactctaattgcagaaaatgctggtgtcaaacaagtgcctttttc 3407427  T
Q  207 gattgttagatcaaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
    ||||||||||||||| | |||  |  |||||||||||||||||||| ||||||||||    
T  3407426 gattgttagatcaaagaacatcacccatatatctctatgtggatatcaaggattatc 3407370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 31175745 - 31176001
Alignment:
Q  7 aagaatatccttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctg 106  Q
    |||||| | ||| |||||||||| | ||||||||||||||||| ||||||||||| |||| ||||| |  ||| ||||||||||| ||| ||||||||||    
T  31175745 aagaatcttcttttgataaattttaaggactgtacaagtcttggcaatctcccaaaagaggtctataaagtgagatcagtgaaaagtctcattctttctg 31175844  T
Q  107 gttgtttaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttc 206  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||||||||| || | |||    
T  31175845 gttgttcaatgattgacaaattggaagaagatatattgcaaatggaatccttgacaactttaattgcagcaaatactggtatcaaacaagtgccctattc 31175944  T
Q  207 gattgttagatcaaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
     || |  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31175945 aatagcaagatcaaaaagcattgcatatatatctctatgtggatatgaaggattatc 31176001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 3314768 - 3315012
Alignment:
Q  19 ctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaaaga 118  Q
    ||||||||||| | ||||||||||||||||   ||||||||||||||||||||||| |||| ||| ||||||||| | |||||||||||||||| |||||    
T  3314768 ctgataaatttcaaggactgtacaagtcttagaaatctcccaagagagatctatcaattgacatcggtgaaaactttcattctttctggttgttcaaaga 3314867  T
Q  119 ttgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttagatc 218  Q
    |||| |||||||||||||||||| |||||||| |||| |||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||||| |||    
T  3314868 ttgaaaaattggaagaagatatagtgcaaatgaaatcattgacaaccctaattgcagcaaaaactggtgtcaaacaagttcctttttcgattgttaaatc 3314967  T
Q  219 aaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
    ||||| |||||  |||||||| ||||||| ||||||||| |||||    
T  3314968 aaaaaacattggatatatatccctatgtgaatatgaaggtttatc 3315012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 3286802 - 3286562
Alignment:
Q  23 taaatttgagggactgtacaagtcttgccaatctcccaagagag-atctatcatttgatatcagtgaaaactcttattctttctggttgtttaaagattg 121  Q
    ||||||||| |||||||| | |||||  ||||||||||| |||| ||||||||  ||| |||  |||| ||||| || ||||||||||||| ||||||||    
T  3286802 taaatttgaaggactgtataggtcttagcaatctcccaa-agagtatctatcaactgaaatctttgaacactctcatcctttctggttgttcaaagattg 3286704  T
Q  122 acaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttagatcaaa 221  Q
    |||| ||||||||||| ||| |||| ||||||||||||||||| || |||||| | ||||| |  || ||| |||| || ||||| ||||| ||||||||    
T  3286703 acaagttggaagaagacatagtgcagatggaatccttgacaacactgattgcaaataatacagctgttaaagaagtgcccttttcaattgtaagatcaaa 3286604  T
Q  222 aagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
    ||||||    |||||||| |||||||||||||||||||||||    
T  3286603 aagcatcagatatatatccctatgtggatatgaaggattatc 3286562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 3262916 - 3262682
Alignment:
Q  20 tgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaaagat 119  Q
    |||||||||||| |||||||| |||||||   ||||||||||   | || || || |||| |||  |||||||||| || ||||||||||| | ||||||    
T  3262916 tgataaatttgaaggactgtagaagtcttcaaaatctcccaaagaatatataccaattgaaatctttgaaaactctcatactttctggttgctcaaagat 3262817  T
Q  120 tgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttagatca 219  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||| || |||||| |  |||| || || ||| | || || | ||| || || ||||||    
T  3262816 tgacaaattggaagaagacatagtgcagatggaatccttgacaacactgattgcaaaggatacaggtgtgaaagaggtgccctattcaatagtaagatca 3262717  T
Q  220 aaaagcattgcgtatatatctctatgtggatatga 254  Q
    ||||||||||  |||||||| ||||||||||||||    
T  3262716 aaaagcattggatatatatccctatgtggatatga 3262682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 3375003 - 3375133
Alignment:
Q  34 gactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaaagattgacaaattggaag 133  Q
    ||||||||||||||| ||||||||||||| | |||||||||||||| |    ||||||||||||| ||||||||||||| ||||||| |||| |||||||    
T  3375003 gactgtacaagtcttaccaatctcccaagggtgatctatcatttgaaacttttgaaaactcttatactttctggttgttcaaagattaacaagttggaag 3375102  T
Q  134 aagatatattgcaaatggaatccttgacaac 164  Q
    |||| ||| |||| |||||||||||||||||    
T  3375103 aagacataatgcagatggaatccttgacaac 3375133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 3325285 - 3325047
Alignment:
Q  25 aatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaaagattgaca 124  Q
    ||||||| ||||||| ||||||||   ||||||||| | ||||||||||| |||| |||  || ||||||||||  | |||||||||| |||||||||||    
T  3325285 aatttgaaggactgtgcaagtcttagaaatctcccaggggagatctatcaattgaaatctttggaaactcttatattatctggttgttcaaagattgaca 3325186  T
Q  125 aattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttagatcaaaaag 224  Q
    | |||||||||| | |   ||| ||||||||||||||||| || |||||  || ||||    || ||||||||||||| ||| ||  | |||| ||||||    
T  3325185 agttggaagaaggtttcgggcagatggaatccttgacaacgctgattgctaaagatacatctgtaaaacaagttccttattcaatactaagattaaaaag 3325086  T
Q  225 cattgcgtatatatctctatgtggatatgaaggattatc 263  Q
    |||||  |||||||| || ||||||||||||||| ||||    
T  3325085 cattggatatatatccctctgtggatatgaaggactatc 3325047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 13808603 - 13808760
Alignment:
Q  7 aagaatatccttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctg 106  Q
    |||||||| || ||| | ||| ||| |||||||||||||||||||| |||||||   | ||| ||||| |||| |||| |||||||||| ||  ||||||    
T  13808603 aagaatattctactgctcaatctgaaggactgtacaagtcttgccagtctcccagaggtgatatatcagttgaaatcattgaaaactctaatcttttctg 13808702  T
Q  107 gttgtttaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaac 164  Q
    |||||| |||||||||||| ||||||||||| ||| | || |||||||||||||||||    
T  13808703 gttgttcaaagattgacaagttggaagaagacatagtccagatggaatccttgacaac 13808760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 7164941 - 7164798
Alignment:
Q  22 ataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcat-ttgatatcagtgaaaactcttattctttctggttgtttaaagatt 120  Q
    |||||||||| ||||||||||||||||  ||||||||||||  | ||||||||  |||| |||| |||||||||| || ||||||||||||| |||||||    
T  7164941 ataaatttgaaggactgtacaagtcttagcaatctcccaaggaatatctatcaagttgaaatcattgaaaactctcatcctttctggttgttcaaagatt 7164842  T
Q  121 gacaaattggaagaagatatattgcaaatggaatccttgacaac 164  Q
    | | | ||||||||||| ||| |||| ||| |||||||||||||    
T  7164841 gcctagttggaagaagacataatgcagatgaaatccttgacaac 7164798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 3267492 - 3267245
Alignment:
Q  16 cttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaa 115  Q
    ||||||||||||||||  || ||||||||||||  |||||||||||   ||||  |||| ||||  ||  ||| |||||| ||  |||||||||||| ||    
T  3267492 cttctgataaatttgaaagattgtacaagtcttagcaatctcccaaagaagataaatcaattgaagtctttgacaactctcatcatttctggttgttcaa 3267393  T
Q  116 agattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttag 215  Q
    |||||||||| || |||||||  ||| |||| ||||||||||| ||||| ||  |   | || |||| || || ||| | || || | |||  | || ||    
T  3267392 agattgacaagttagaagaaggcatagtgcagatggaatccttaacaacactggtcataaaagatacaggtgtgaaagaggtgccgtattcagtggtaag 3267293  T
Q  216 atcaaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
    ||  |||||||| |  ||||||||||||||||||||||||||||||||    
T  3267292 attgaaaagcatcggatatatatctctatgtggatatgaaggattatc 3267245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 20838530 - 20838786
Alignment:
Q  7 aagaatatccttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctg 106  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  20838530 aagaatatcgttctgataaatttgagggactgtaaaagtcttgccaatctcccaagagagatctatcaattgatatcggtgaaaactcttattctttctg 20838629  T
Q  107 gttgtttaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttc 206  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||  |||||||||| || | |||    
T  20838630 gttgttcaaagattgagaaattggaagaagatataatgcaaatggaatccttgacagctctaattgcagcaaatactggtatcaaacaagtgccctattc 20838729  T
Q  207 gattgttagatcaaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
     || |  ||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  20838730 aatagcaagatcaaaaagcattggatatatatcactatgtggatatgaaggattatc 20838786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 20812175 - 20812431
Alignment:
Q  7 aagaatatccttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctg 106  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||    
T  20812175 aagaatatcgttctgataaatttgagggactgtaaaagtcttgccaatctcccaagagagatctataaattgatatcggtgaaaactcttattctttctg 20812274  T
Q  107 gttgtttaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttc 206  Q
    |||||| ||||||||| || ||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||  |||||||||| || | |||    
T  20812275 gttgttcaaagattgagaagttggaagaagatataatgcaaatggaatccttgacagctctaattgcagcaaatactggtatcaaacaagtgccctattc 20812374  T
Q  207 gattgttagatcaaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
     || |  ||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  20812375 aatagcaagatcaaaaagcattgcatatatatcactatgtggatacgaaggattatc 20812431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 15802818 - 15803065
Alignment:
Q  16 cttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaa 115  Q
    |||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||| |||| | ||||||||||||| || ||||||||||||| ||    
T  15802818 cttctgataaatttgaaggactgtacgagtcttagcaatctcccaagagagatctatcaattgagaacagtgaaaactctcatcctttctggttgttcaa 15802917  T
Q  116 agattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttag 215  Q
    ||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |||| ||||||| | ||||||||||| ||||||||||| || ||    
T  15802918 agattgacaaattagacgaagatatattgcaaatggaatccttgaaaactctaatggcagcaaatactagagtcaaacaagtgcctttttcgatcgtcag 15803017  T
Q  216 atcaaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  15803018 atcaaaaagcattggatatatatctctatgtggatataaaggattatc 15803065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 12599346 - 12599180
Alignment:
Q  16 cttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaa 115  Q
    |||||| | ||||| | |||||||||||||||| ||||||||||| | ||||||||||| |||| | |  ||||||||||||| ||||||||||||| ||    
T  12599346 cttctgttgaatttcaaggactgtacaagtcttaccaatctcccacgggagatctatcaattgaaaactttgaaaactcttatactttctggttgttcaa 12599247  T
Q  116 agattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatac 182  Q
    |||||  ||| ||||||||||| ||| | || ||||||||||||||||| || |||||  |||||||    
T  12599246 agattagcaagttggaagaagacatagtacagatggaatccttgacaacactgattgccaaaaatac 12599180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 30417727 - 30417971
Alignment:
Q  16 cttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaa 115  Q
    |||||||||||||| | ||| ||||||||||||| |||||| ||||||||||| | ||| ||||| || |||| |||||| || |||  |||||||| ||    
T  30417727 cttctgataaattttaaggattgtacaagtcttggcaatctaccaagagagatatctcaattgatgtctgtgacaactctcatacttgatggttgttcaa 30417826  T
Q  116 agattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttag 215  Q
    | |||    |||||||||||||| || |||||||| ||||||||| ||||||||| |||| ||  |||||  |  || |||  |||||||| || |||||    
T  30417827 acattactgaattggaagaagatgtagtgcaaatgaaatccttgaaaactctaatggcagcaagaactggtatagaaaaagcacctttttccatagttag 30417926  T
Q  216 atcaaaaagcattgcgtatatatctctatgtggatatgaaggatt 260  Q
     || ||||||||||  |||||||| || ||||||| |||||||||    
T  30417927 ttcgaaaagcattgtttatatatccctgtgtggatttgaaggatt 30417971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 6906100 - 6905853
Alignment:
Q  16 cttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaa 115  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||  ||||||| ||||||||||| ||||||| |||||||| ||    
T  6906100 cttctgataaatttgaaggactgtacaagtcttggcaatctaccaagggagatctatcagctgatatctgtgaaaactctcattctttttggttgttcaa 6906001  T
Q  116 agattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttag 215  Q
    |||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||  || ||||| ||||||||    
T  6906000 agattgacaaattggaggaagatatagtgcaaatgaaatccttgacaactctagttgcagcaaatactggcgtcaaacaagcacccttttccattgttag 6905901  T
Q  216 atcaaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  6905900 atcaaaaagcattgtgtatatatccctatgcggatatgaaggattatc 6905853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 32411374 - 32411130
Alignment:
Q  16 cttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctggttgtttaa 115  Q
    |||||||||||||||| ||||||||||||||||  || ||||||||   |||| ||||| |||| |||  |||||||||| || ||||||||||||| ||    
T  32411374 cttctgataaatttgaaggactgtacaagtcttaacagtctcccaaagaagatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaa 32411275  T
Q  116 agattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttcgattgttag 215  Q
    ||||||| || |||||||||   ||| ||||||||||||| |||||||| || |||||| || |||| || || ||| | || || | ||| || || ||    
T  32411274 agattgaaaacttggaagaa---atagtgcaaatggaatcgttgacaacactgattgcaaaagatacaggtgtaaaagaggtgccctgttcaatagtaag 32411178  T
Q  216 atcaaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
    ||| |||||||| || ||||||||||||||||||||||||||||||||    
T  32411177 atcgaaaagcatcgcatatatatctctatgtggatatgaaggattatc 32411130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 47986954 - 47986908
Alignment:
Q  88 aaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||| ||||||||||| |||||||||||| |||| ||||||||    
T  47986954 aaaactctcattctttctggctgtttaaagattaacaagttggaaga 47986908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 47996241 - 47996195
Alignment:
Q  88 aaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||| ||||||||||| |||||||||||| |||| ||||||||    
T  47996241 aaaactctcattctttctggctgtttaaagattaacaagttggaaga 47996195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 48005528 - 48005482
Alignment:
Q  88 aaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||| ||||||||||| |||||||||||| |||| ||||||||    
T  48005528 aaaactctcattctttctggctgtttaaagattaacaagttggaaga 48005482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 48014813 - 48014767
Alignment:
Q  88 aaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||| ||||||||||| |||||||||||| |||| ||||||||    
T  48014813 aaaactctcattctttctggctgtttaaagattaacaagttggaaga 48014767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 6449 - 6193
Alignment:
Q  7 aagaatatccttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctg 106  Q
    |||||||| |||||||| ||||||| ||| ||||||||||||| |||||| ||||| |||||||||||  ||||||| |||||||||||||| |||| ||    
T  6449 aagaatattcttctgattaatttgaaggattgtacaagtcttggcaatctaccaagggagatctatcagctgatatctgtgaaaactcttatcctttttg 6350  T
Q  107 gttgtttaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttc 206  Q
    |||||| |||||| ||||||||||||||||||||| |||||||| |||| ||||| ||| || |||||| |||||||||| |||||||||  || |||||    
T  6349 gttgttcaaagatcgacaaattggaagaagatatagtgcaaatgaaatctttgacgactttagttgcagcaaatactggcatcaaacaagcacccttttc 6250  T
Q  207 gattgttagatcaaaaagcattgcgtatatatctctatgtggatatgaaggattatc 263  Q
     ||  |||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  6249 catatttagatcaaaaagcattgtgtatatatccctatgcggatatgaaggattatc 6193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 14767250 - 14766993
Alignment:
Q  7 aagaatatccttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctg 106  Q
    |||||| | ||||| |||||||||| |||||||||||||||||  ||||||||||||||||||||||| |||| |||  |||||||||| || ||||| |    
T  14767250 aagaatgttcttctcataaatttgaaggactgtacaagtcttgaaaatctcccaagagagatctatcaattgaaatctttgaaaactctcatcctttccg 14767151  T
Q  107 gttgtttaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgcagaaaatactggcgtcaaacaagttcctttttc 206  Q
    | |||| |||||||||||||||||||||||||||  |||||||||||||||||||| | || ||||||  ||||||     | ||| ||||||| | |||    
T  14767150 gctgttcaaagattgacaaattggaagaagatattgtgcaaatggaatccttgacatcactgattgcaacaaatacatctataaaagaagttccatattc 14767051  T
Q  207 gattgttagatcaaaaagcattgcgtatatatctctatgtggatatgaaggattatcg 264  Q
     ||  | |||| |||||||||||  |||||||| |||||||| |||||||||||||||    
T  14767050 aatactaagattaaaaagcattggatatatatccctatgtggttatgaaggattatcg 14766993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 8371962 - 8371807
Alignment:
Q  7 aagaatatccttctgataaatttgagggactgtacaagtcttgccaatctcccaagagagatctatcatttgatatcagtgaaaactcttattctttctg 106  Q
    |||||| | ||||| |||||||| | |||||||| || |||||  ||||||||||||||||||||||| |||| ||| ||||||||||| || ||| | |    
T  8371962 aagaatcttcttctcataaatttaaaggactgtataattcttgaaaatctcccaagagagatctatcaattgaaatcggtgaaaactctcatccttacgg 8371863  T
Q  107 gttgtttaaagattgacaaattggaagaagatatattgcaaatggaatccttgaca 162  Q
    | |||| || ||||||||||||||||||||||||| |||| ||||| |||||||||    
T  8371862 gctgttcaacgattgacaaattggaagaagatatagtgcagatggagtccttgaca 8371807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 36213931 - 36213885
Alignment:
Q  88 aaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||    
T  36213931 aaaactctcattctttctggatgttcaaagattgacaaattggaaga 36213885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 5447564 - 5447612
Alignment:
Q  86 tgaaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||||| |||||||||||||||||||||||||||||  |||||||    
T  5447564 tgaaaactctcattctttctggttgtttaaagattgacaagctggaaga 5447612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 5344840 - 5344886
Alignment:
Q  88 aaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||||    
T  5344840 aaaactctcattctttcgggttgtttaaagattgacaagttggaaga 5344886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 5383303 - 5383372
Alignment:
Q  86 tgaaaactcttattctttctggttgtttaaagattgacaaattggaagaagatatattgcaaatggaatc 155  Q
    |||||||||| ||||||||||||||||||||||||  ||| |||||||| || |||   |||||||||||    
T  5383303 tgaaaactctcattctttctggttgtttaaagattaccaagttggaagaggacatagaacaaatggaatc 5383372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 5396930 - 5396979
Alignment:
Q  89 aaactcttattctttctggttgtttaaagattgacaaattggaagaagat 138  Q
    |||||||| |||||||||| ||||||  ||||||||||||||||||||||    
T  5396930 aaactcttcttctttctgggtgtttactgattgacaaattggaagaagat 5396979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 5128521 - 5128473
Alignment:
Q  86 tgaaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||||| ||||||||||||||| ||| ||||||||| ||||||||    
T  5128521 tgaaaactctcattctttctggttgtataatgattgacaagttggaaga 5128473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 5425887 - 5425975
Alignment:
Q  86 tgaaaactcttattctttctggttgtttaaagattgacaaattggaagaagatatattgcaaatggaatccttgacaactctaattgca 174  Q
    |||||||||| ||||||||||| ||| ||| ||||||||| |||||||| || |||   ||||||||||| || || ||||| ||||||    
T  5425887 tgaaaactctcattctttctgggtgtgtaatgattgacaagttggaagaggacatagaacaaatggaatctttaaccactctgattgca 5425975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 5447134 - 5447182
Alignment:
Q  86 tgaaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    ||||||||||  ||||||||||||||||||||||||||||  |||||||    
T  5447134 tgaaaactctcgttctttctggttgtttaaagattgacaaggtggaaga 5447182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 5182050 - 5181983
Alignment:
Q  67 atctatcatttgatatcagtgaaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||| |||||| |||| | || ||||| ||||||||||| ||||||| ||||||||| ||||||||    
T  5182050 atctataatttgaaatcattaaacactctcattctttctgggtgtttaatgattgacaagttggaaga 5181983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 5434012 - 5434060
Alignment:
Q  86 tgaaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||||| || ||| |||| ||||||||||||||||| ||||||||    
T  5434012 tgaaaactctcatccttactggctgtttaaagattgacaatttggaaga 5434060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 4133527 - 4133480
Alignment:
Q  86 tgaaaactcttattctttctggttgtttaaagattgacaaattggaag 133  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||    
T  4133527 tgaaaactcttattctttctggctgtttaattattgacaaattggaag 4133480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 4335322 - 4335370
Alignment:
Q  86 tgaaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||||| ||||| || || ||||||||||||||||| ||||||||    
T  4335322 tgaaaactctcattctatcaggatgtttaaagattgacaagttggaaga 4335370  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 9004 - 8956
Alignment:
Q  86 tgaaaactcttattctttctggttgtttaaagattgacaaattggaaga 134  Q
    |||||||||| ||||||||||| ||| ||| ||||||||| ||||||||    
T  9004 tgaaaactctcattctttctgggtgtataatgattgacaagttggaaga 8956  T

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