View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_142 (Length: 268)
Name: NF10092A_low_142
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_142 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 268
Target Start/End: Complemental strand, 21832015 - 21831750
Alignment:
| Q |
4 |
atactaataggatgcataatttcatgataatcagcattcgtctcttacatcaaatatggtatcaacaaaacaagttcatcttatagagatctcatcaacc |
103 |
Q |
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| T |
21832015 |
atactaataggatgcataatttcatgataatcagcattcgtctcttacaccaaatatggtatcaacaaaacaagttcatcttatagagatctcatcaacc |
21831916 |
T |
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| Q |
104 |
acatggagttcgaacttgaaataacctgaaaatacatttaaaataagc-nnnnnnnnnnnnctttgtagaccgataaaaacatcaatgaggacattagat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21831915 |
acatggagttcgaacttgaaataacctgaaaatacatttaaaataagcaaaaaaaaaaaaactttgtagaccgataaaaacatcaatgaggacattagat |
21831816 |
T |
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| Q |
203 |
ctcaaacatggtattaatggagtgatcaaataccacgatcgctttcgaggagggcacttggatacc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21831815 |
ctcaaacatggtattaatggagtgatcaaataccacgatggctttcgaggagggcacttggatacc |
21831750 |
T |
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