View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_144 (Length: 267)

Name: NF10092A_low_144
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_144
NF10092A_low_144
[»] chr1 (16 HSPs)
chr1 (9-153)||(13244107-13244251)
chr1 (158-267)||(13244450-13244559)
chr1 (152-267)||(13080788-13080903)
chr1 (155-267)||(13086261-13086373)
chr1 (157-267)||(13094553-13094663)
chr1 (150-267)||(19279089-19279206)
chr1 (151-267)||(12963797-12963913)
chr1 (157-267)||(13129982-13130092)
chr1 (84-153)||(12963575-12963644)
chr1 (79-146)||(19278827-19278894)
chr1 (157-267)||(13161675-13161785)
chr1 (158-267)||(13271740-13271849)
chr1 (157-267)||(13070104-13070214)
chr1 (157-267)||(13204613-13204723)
chr1 (157-216)||(13101205-13101264)
chr1 (9-88)||(19278730-19278809)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 13244107 - 13244251
Alignment:
Q  9 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttatt 108  Q
    |||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13244107 gagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttatt 13244206  T
Q  109 gcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244207 gcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 13244450 - 13244559
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatcct 257  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctgatatact 13244549  T
Q  258 acctagtgga 267  Q
    ||||||||||    
T  13244550 acctagtgga 13244559  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 152 - 267
Target Start/End: Original strand, 13080788 - 13080903
Alignment:
Q  152 aagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctga 251  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||||||||||||||||| ||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatcgga 13080887  T
Q  252 tatcctacctagtgga 267  Q
    ||  || |||||||||    
T  13080888 taaacttcctagtgga 13080903  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 13086373 - 13086261
Alignment:
Q  155 agcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatat 254  Q
    ||||| |||| || || |||||||||||||| ||||||||| | || ||||| | ||||||| |  ||||||||||||||||||| |||||| |||||||    
T  13086373 agcttaataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtgcaatcaaagctgatat 13086274  T
Q  255 cctacctagtgga 267  Q
     ||||||||||||    
T  13086273 actacctagtgga 13086261  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 13094663 - 13094553
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatcc 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||||||| |  | ||| |||| |  ||||| |||||||||||||| |    
T  13094663 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctgtaccttttgagcatatctgtgcaatcaaatctgatatac 13094564  T
Q  257 tacctagtgga 267  Q
    |||||||||||    
T  13094563 tacctagtgga 13094553  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 267
Target Start/End: Original strand, 19279089 - 19279206
Alignment:
Q  150 gaaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatct 249  Q
    |||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| | ||| ||| |  ||||| | |||||||||||  | || ||     
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattcc 19279188  T
Q  250 gatatcctacctagtgga 267  Q
    ||||| ||||||||||||    
T  19279189 gatatactacctagtgga 19279206  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 12963797 - 12963913
Alignment:
Q  151 aaagagcttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctg 250  Q
    |||| |||||||||||||||||| ||||||||||| || |||||| | |||||||| | ||||||| |  ||||| | ||||||||||| || ||||| |    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcag 12963896  T
Q  251 atatcctacctagtgga 267  Q
    ||||  |||||||||||    
T  12963897 atatattacctagtgga 12963913  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 13130092 - 13129982
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatcc 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||||||| |  | ||| |||| |  ||| | |||||||||||||| |    
T  13130092 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgttcaatcaaatctgatatac 13129993  T
Q  257 tacctagtgga 267  Q
    |||||||||||    
T  13129992 tacctagtgga 13129982  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  84 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 153  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  79 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 146  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 13161785 - 13161675
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatcc 256  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||| | ||| ||| |  | ||| |||| |  ||||| |||||||| ||||| |    
T  13161785 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatccacctataccttttgagcatatctgtgcaatcaaatccgatatac 13161686  T
Q  257 tacctagtgga 267  Q
    |||||||||||    
T  13161685 tacctagtgga 13161675  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 13271849 - 13271740
Alignment:
Q  158 ttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatcct 257  Q
    ||||||||||  |||||||||||| ||| |||||||||||||| || || | ||||||| |  ||||| | |||||||||||  | || |||||||| ||    
T  13271849 ttgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttgatcacaagtgtgcagttaattctgatatact 13271750  T
Q  258 acctagtgga 267  Q
    ||||||||||    
T  13271749 acctagtgga 13271740  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 13070104 - 13070214
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatcc 256  Q
    |||||||| || || |||||||||||||| |||||||||||||| || || | ||||||| |  | ||| |||| |  ||||| |||||||| ||||| |    
T  13070104 cttgataatctagtgtaccttcatggagctatatgtgaaaccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac 13070203  T
Q  257 tacctagtgga 267  Q
    |||||||||||    
T  13070204 tacctagtgga 13070214  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 13204723 - 13204613
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatcc 256  Q
    ||||||||||| || |||||||||||||| ||||||||| |||| || || | ||||||| |  | ||| |||| |  ||||| |||||||| ||||| |    
T  13204723 cttgataagctagtgtaccttcatggagctatatgtgaagccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac 13204624  T
Q  257 tacctagtgga 267  Q
    |||||||||||    
T  13204623 tacctagtgga 13204613  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 13101264 - 13101205
Alignment:
Q  157 cttgataagcttgtttaccttcatggagccatatgtgaaaccttaaggctatttcctcct 216  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| ||||| | |||||||    
T  13101264 cttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcct 13101205  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 19278730 - 19278809
Alignment:
Q  9 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga 88  Q
    |||| |||||||| || ||| ||||||||||||||| | |||||| ||||||||||| || | ||||||||  |||||||    
T  19278730 gagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

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