View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_152 (Length: 265)
Name: NF10092A_low_152
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_152 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 45881956 - 45881705
Alignment:
| Q |
1 |
acttgcagtttgtccccaagatgcaaggatatctagaaacaacttccaaatcttacattctattcttatgactttcaaacattcaagatagtcaccaaat |
100 |
Q |
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| T |
45881956 |
acttgcattttgtccccaagatgcaaggatatctagaaacaacttccaaatcttacattctattcttatgactttcaaacattcaagatattcaccaaat |
45881857 |
T |
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| Q |
101 |
ttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactctagattgttgcaagtgtggttgaattgagcctcgcctactcaaaaaggt |
200 |
Q |
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| T |
45881856 |
ttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactctagattgttgcaagtgtggttgaattgagcctcgcctactcaaaaaggt |
45881757 |
T |
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| Q |
201 |
tgtgaattatgctatttcacaatgtcctgcacttaggactccattattatct |
252 |
Q |
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| T |
45881756 |
tgtgaattatgctatttcacaatgtcctgcacttaggactccattatcatct |
45881705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45856928 - 45856708
Alignment:
| Q |
1 |
acttgcagtttgtccccaagatgcaaggatatctagaaacaacttccaaatcttacattctattcttatgactttcaaacattcaagatagtcaccaaat |
100 |
Q |
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| T |
45856928 |
acttgcattttgtccccaagatacaaggatctctggaaacaacttccaaatcttacattgtgttcctatgactttcgaactttcaagatattcaccaact |
45856829 |
T |
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| Q |
101 |
ttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactctagattgttgcaagtgtggttgaattgagcctcgcctactcaaaaaggt |
200 |
Q |
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| T |
45856828 |
ttgtgtctaaggttttatctcttcgtgattcctctatcgcactccacgctctagaatattccaagagtggttgcattgagcctcgccaactcaaaaaggt |
45856729 |
T |
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| Q |
201 |
tgtgaattatgctatttcaca |
221 |
Q |
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| T |
45856728 |
tgtgaattatgctatttcaca |
45856708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 2996459 - 2996392
Alignment:
| Q |
70 |
gactttcaaacattcaagatagtcaccaaatttgtgtcgaaggttttatctctcagtgattcctctat |
137 |
Q |
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| T |
2996459 |
gactttcgaacttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcctctat |
2996392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 20949498 - 20949555
Alignment:
| Q |
84 |
caagatagtcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcaca |
141 |
Q |
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| T |
20949498 |
caagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatcaca |
20949555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 20981867 - 20981806
Alignment:
| Q |
82 |
ttcaagatagtcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact |
143 |
Q |
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| T |
20981867 |
ttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact |
20981806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 20995026 - 20994965
Alignment:
| Q |
82 |
ttcaagatagtcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact |
143 |
Q |
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| T |
20995026 |
ttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact |
20994965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 45870467 - 45870386
Alignment:
| Q |
62 |
attcttatgactttcaaacattcaagatagtcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacact |
143 |
Q |
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| T |
45870467 |
attctgatgactttcgaacttataagatattcaccagatttgtttctagggttttatctctccgggattcctctatctcact |
45870386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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