View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_16 (Length: 428)
Name: NF10092A_low_16
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 404
Target Start/End: Original strand, 5081609 - 5082007
Alignment:
| Q |
9 |
aatgagttgggtatgattccactaaattgatttgaactcaagtcaattatgacgagatttgaagcattggatatactatttggaatttttccaacaaact |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5081609 |
aatgagttgggtatgattccactaaattgatttgaactcaagtcaattatgacgagatttgaagcattggatatactatttggaatttttccaacaaact |
5081708 |
T |
|
| Q |
109 |
tgtttccgtacatgtgtagttgctgttggttaggaaggccaactcccagatttgatggaagcatgcctgagaaagaattttgttcaagatgcaaatattc |
208 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5081709 |
tgtttccgtacatgtgtagttgctgtaggttaggaaggccaaatcccagatttgatggaagcatgcctgagaaagaattttgttcaagatgcaaatattc |
5081808 |
T |
|
| Q |
209 |
caatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttatttcctatttgtagaagctgaagttgattgagactgccaatctccatt |
308 |
Q |
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| T |
5081809 |
caatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttatttcccatttgtagaagctgaagttgattgagactgccaatctccatt |
5081908 |
T |
|
| Q |
309 |
ggtatcgaacctaaaatcacatatcattgagaaacaacaaataaacaaat---atgtataagatgatgcatagcagtaccgatgcatgaaatgcttaag |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5081909 |
ggtatcgaacctaaaatcacatatcattgagaaacaacaaataaacaaattacatgtataagatgatgcatagcagtaccgatgcatgaaatgcttaag |
5082007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 64 - 349
Target Start/End: Complemental strand, 5100322 - 5100037
Alignment:
| Q |
64 |
gatttgaagcattggatatactatttggaatttttccaacaaacttgtttccgtacatgtgtagttgctgttggttaggaaggccaactcccagatttga |
163 |
Q |
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| T |
5100322 |
gatttgaagcattggatatactatttggaattcttccaacaaatctgtttgctaaaatgtctagttgttgtaggttaggaagtccaaatcccaaatttga |
5100223 |
T |
|
| Q |
164 |
tggaagcatgcctgagaaagaattttgttcaagatgcaaatattccaatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttattt |
263 |
Q |
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||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |
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| T |
5100222 |
tggaagcatgcctgagagagaattttgatcaagatacaaaatttccaatgttgaaatgttgaagacttttgaaggaataggtccactcaagctgttattt |
5100123 |
T |
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| Q |
264 |
cctatttgtagaagctgaagttgattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaa |
349 |
Q |
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|| ||| ||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
5100122 |
cccattagtagaagttgaagttgactgagatggccaatctccattggtatcgaacctaaaatcaaatatcataaagaaacaacaaa |
5100037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 62 - 357
Target Start/End: Complemental strand, 5117883 - 5117588
Alignment:
| Q |
62 |
gagatttgaagcattggatatactatttggaatttttccaacaaacttgtttccgtacatgtgtagttgctgttggttaggaaggccaactcccagattt |
161 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| || || ||| |||||||||| |||| ||| | |||| |
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| T |
5117883 |
gagatttgaagcattggatatagtatttggaatttttccaacaaatttgtttccatacatttggaggaattgtaggttaggaagtccaaatccaaaattt |
5117784 |
T |
|
| Q |
162 |
gatggaagcatgcctgagaaagaattttgttcaagatgcaaatattccaatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttat |
261 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| || |||||||||| || ||||||||||||| |
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| T |
5117783 |
gatggaagcatgcctgagaaagaatttagttcaagacgcaaatatttcaatgttgaaatgttgaagacttgtgaaggaataggcccactcaagctgttat |
5117684 |
T |
|
| Q |
262 |
ttcctatttgtagaagctgaagttgattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaataaacaaa |
357 |
Q |
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|| || |||||||||||||||||||||| |||||||||| ||||||| |||||||| |||||||||||| |||||| |||||||||||||| |
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| T |
5117683 |
ttttcataaatagaagctgaagttgattgagatggccaatctcctttggtattgaacctaacatcacatatcatagagaaaaaacaaataaacaaa |
5117588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 63 - 357
Target Start/End: Original strand, 14413968 - 14414262
Alignment:
| Q |
63 |
agatttgaagcattggatatactatttggaatttttccaacaaacttgtttccgtacatgtgtagttgctgttggttaggaaggccaactcccagatttg |
162 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||||||| ||| ||||||| |
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| T |
14413968 |
agatttgaagcattggatatactatttggaatttttccaacaaacttgtttccatacatgcgtagtactcgtaggttaggaaggccaaatccgagatttg |
14414067 |
T |
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| Q |
163 |
atggaagcatgcctgagaaagaattttgttcaagatgcaaatattccaatgttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttatt |
262 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||| |
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| T |
14414068 |
atggaagcatgcctgagaaagaattttgtccaagaaacaaattttccaatgttgaaatgttgaagagttttgaaggaataggtccactcaagttgttatt |
14414167 |
T |
|
| Q |
263 |
tcctatttgtagaagctgaagttgattgagactgccaatctccattggtatcgaacctaaaatcacatatcattgagaaacaacaaataaacaaa |
357 |
Q |
| |
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| |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||| |
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| T |
14414168 |
ccacatttgtagaatctgaagttgattgagatggccaatctccattggtaacgaacctaacatcacatatcataaagaaacaacacataaacaaa |
14414262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 16884641 - 16884299
Alignment:
| Q |
14 |
gttgggtatgattccactaaattgatttgaactcaagtcaattatgacgagatttgaagcattggatatactatttggaatttttccaacaaacttgttt |
113 |
Q |
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||||||||| ||||||||||||| ||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
16884641 |
gttgggtataattccactaaatttattccaactcaaatcaattatgaagaggtttgaagcattggatatactatttggaattttcccaacaaatttgttt |
16884542 |
T |
|
| Q |
114 |
ccgtacatgtgtagttgctgttggttaggaaggccaactcccagatttgatggaagcatgcctgagaaagaattttgttcaagatgcaaatattccaatg |
213 |
Q |
| |
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||||||||| || | ||| | ||||||||||||| ||||| ||| | ||||||||||||||||| ||||||| | ||||||||||||| |||||||| |
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|
| T |
16884541 |
ttgtacatgtgcagctcttgtagattaggaaggccaagtcccatattgggtggaagcatgcctgagagagaatttagctcaagatgcaaatgttccaatg |
16884442 |
T |
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| Q |
214 |
ttgaaatgttgaagattttcaaaggaataggtccgctcaagctgttatttcctatttgtagaagctgaagttgattgagactgccaatctccattggtat |
313 |
Q |
| |
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||||||||||||||| ||| |||||| | |||| ||||||||||||||||| |||||||||| ||||| |||||||||| ||||||||||||| ||||| |
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| T |
16884441 |
ttgaaatgttgaagagtttagaaggaacatgtccactcaagctgttatttcccatttgtagaacctgaatttgattgagattgccaatctccataggtat |
16884342 |
T |
|
| Q |
314 |
cgaacctaaaatcacatatcattgagaaacaacaaataaacaaa |
357 |
Q |
| |
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| |||||| || ||| |||| |||||||||||||||||||||| |
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| T |
16884341 |
caaacctataagaacacatca-tgagaaacaacaaataaacaaa |
16884299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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