View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_163 (Length: 261)

Name: NF10092A_low_163
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_163
NF10092A_low_163
[»] chr4 (1 HSPs)
chr4 (13-255)||(54423620-54423862)
[»] chr1 (6 HSPs)
chr1 (13-191)||(20127319-20127497)
chr1 (32-202)||(27645594-27645764)
chr1 (57-133)||(12461045-12461121)
chr1 (120-184)||(13190645-13190709)
chr1 (185-255)||(20120986-20121056)
chr1 (32-232)||(44137419-44137619)
[»] chr8 (2 HSPs)
chr8 (57-196)||(9182994-9183133)
chr8 (57-196)||(11625140-11625279)
[»] chr6 (3 HSPs)
chr6 (57-196)||(10161217-10161356)
chr6 (57-133)||(16860983-16861059)
chr6 (76-190)||(21740989-21741103)
[»] scaffold0703 (1 HSPs)
scaffold0703 (57-133)||(1937-2013)
[»] scaffold0010 (1 HSPs)
scaffold0010 (69-196)||(238965-239092)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 54423620 - 54423862
Alignment:
Q  13 tgaaccccattttaaataaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttcc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  54423620 tgaaccccattttaaataaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctattttttc 54423719  T
Q  113 ttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttcttggaaaatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  54423720 ttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttcttgggaaatc 54423819  T
Q  213 catttgttaataagtggacgaagacgattgaccaggaccttag 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  54423820 catttgttaataagtggacgaagacgattgaccaggaccttag 54423862  T

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Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 20127497 - 20127319
Alignment:
Q  13 tgaaccccattttaaataaaatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttcc 112  Q
    |||| ||||||||||  | ||| | ||||||||| | |||| |||||||||| |||||||||||||| |||||||| || |||||||| |||||||| ||    
T  20127497 tgaaacccattttaaggagaatggatttgaggtaaggccaacttacactatcaaatgccttggatatatcaagttttagtgccacctcgcctattttccc 20127398  T
Q  113 ttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaag 191  Q
    |||||||||||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||||||||||||    
T  20127397 ttttgttttgcagcgcatatgatggaggacttcaaaagcggttagcgcattatccatgattgagcgagaatgcacaaag 20127319  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 27645594 - 27645764
Alignment:
Q  32 aatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcata 131  Q
    ||||||||| |||||| ||||  | |||||||| || ||||| || || |||||||| |||||||||||||| ||||| ||||| |||||||||||||||    
T  27645594 aatagctttaaggtacaaccagctaacactatcaaaagccttagagatatcaagtttcagagccacctcaccaattttacctttggttttgcagcgcata 27645693  T
Q  132 tgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttc 202  Q
    ||||| |  | ||| || || ||||  |||||||||||||| ||||| || || || || |||||||||||    
T  27645694 tgatgtaagatttcaaaggccgttaaagcattatccatgatagagcgggagtgaacgaatgctgcctgttc 27645764  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 12461045 - 12461121
Alignment:
Q  57 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg 133  Q
    ||||| || ||||| |||||||| |||||||| | ||| ||||||||| |||||||||||| ||| || ||||||||    
T  12461045 acactgtcaaatgctttggatatatcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg 12461121  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 13190645 - 13190709
Alignment:
Q  120 ttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatg 184  Q
    ||||| |||||||| ||||||| ||| ||||||||||  |||||||||||||| || ||||||||    
T  13190645 ttgcaccgcatatggtgaagaatttcaaatgctgttaaagcattatccatgatggaacgagaatg 13190709  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 20121056 - 20120986
Alignment:
Q  185 cacaaaggctgcctgttcttggaaaattcatttgttaataagtggacgaagacgattgaccaggaccttag 255  Q
    |||||||||||| ||||||||| |||| |||||||| || | |||| | ||||||||| | ||||||||||    
T  20121056 cacaaaggctgcttgttcttgggaaatccatttgttgattaatggatggagacgattggcaaggaccttag 20120986  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 44137619 - 44137419
Alignment:
Q  32 aatagctttgaggtacgaccaatttacactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcata 131  Q
    ||||||||  ||||| |||||| ||||||| || || ||||| || ||||| |  || | ||| || ||||| |||||||||||  ||||||| ||||||    
T  44137619 aatagcttcaaggtaggaccaacttacactgtcaaaagccttagagatgtctaacttcaaagcaacttcaccaatttttcctttccttttgcaacgcata 44137520  T
Q  132 tgatgaagaacttcgaatgctgttagcgcattatccatgattgagcgagaatgcacaaaggctgcctgttcttggaaaattcatttgttaataagtggac 231  Q
    || || |||   || |||| |||||  || ||||||||||| || ||||| || |||||||| | ||||||| |  | || ||||||||||| || ||||    
T  44137519 tggtggagagtctcaaatgttgttaaagcgttatccatgatagaacgagagtgaacaaaggcagactgttctggtgagatccatttgttaatgagaggac 44137420  T
Q  232 g 232  Q
    |    
T  44137419 g 44137419  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 9182994 - 9183133
Alignment:
Q  57 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta 156  Q
    |||||||| || ||||| || ||||||||||| ||||| || ||||||  |||||||||  | ||||||||||||| ||| |||| ||| || ||||| |    
T  9182994 acactatcaaaagccttcgaaatgtcaagttttagagctacatcaccttgttttcctttattcttgcagcgcatataatgtagaatttcaaaggctgtga 9183093  T
Q  157 gcgcattatccatgattgagcgagaatgcacaaaggctgc 196  Q
    |||| |||||||| || || |||||| ||||||| |||||    
T  9183094 gcgcgttatccattatcgaacgagaaggcacaaacgctgc 9183133  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 11625279 - 11625140
Alignment:
Q  57 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta 156  Q
    |||||||| || ||||| || ||||||||||| ||||| || |||||| ||||||||||  | ||||||||||||| ||| || | ||| || ||||| |    
T  11625279 acactatcaaaagccttcgaaatgtcaagttttagagctacatcacctttttttcctttattcttgcagcgcatataatgtagtatttcaaaggctgtga 11625180  T
Q  157 gcgcattatccatgattgagcgagaatgcacaaaggctgc 196  Q
    |||| |||||||| || || |||||| ||||||| |||||    
T  11625179 gcgcgttatccattatcgaacgagaaggcacaaacgctgc 11625140  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 10161217 - 10161356
Alignment:
Q  57 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgtta 156  Q
    |||||||| || ||||| || ||||||||||| ||||| || ||||||  |||||||||  | ||||||||||||| ||| |||| ||| || ||||| |    
T  10161217 acactatcaaaagccttcgaaatgtcaagttttagagctacatcaccttgttttcctttattcttgcagcgcatataatgtagaatttcaaaggctgtga 10161316  T
Q  157 gcgcattatccatgattgagcgagaatgcacaaaggctgc 196  Q
    |||| |||||||| || || |||||| ||||||| |||||    
T  10161317 gcgcgttatccattatcgaacgagaaggcacaaacgctgc 10161356  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 16861059 - 16860983
Alignment:
Q  57 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg 133  Q
    ||||| || ||||| ||||||||||||||||| | ||| ||||||||| |||||||||||| ||| || ||||||||    
T  16861059 acactgtcaaatgctttggatatgtcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg 16860983  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 21740989 - 21741103
Alignment:
Q  76 atatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatccatgattga 175  Q
    |||| |||||||| | ||||||||||||| | || ||||| | ||| || |||||||||||||||| |||| ||||  | || ||||| ||||| || ||    
T  21740989 atatatcaagtttcaaagccacctcacctttcttccctttcgatttacaacgcatatgatgaagaatttcgtatgccatcagagcattgtccataatgga 21741088  T
Q  176 gcgagaatgcacaaa 190  Q
    | ||||||| |||||    
T  21741089 gagagaatggacaaa 21741103  T

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Target: scaffold0703 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 1937 - 2013
Alignment:
Q  57 acactatcgaatgccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatg 133  Q
    ||||| || ||||| |||||||| |||||||| | ||| ||||||||| |||||||||||| ||| || ||||||||    
T  1937 acactgtcaaatgctttggatatatcaagtttcaaagcaacctcacctttttttccttttgatttacaacgcatatg 2013  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 238965 - 239092
Alignment:
Q  69 gccttggatatgtcaagtttgagagccacctcacctatttttccttttgttttgcagcgcatatgatgaagaacttcgaatgctgttagcgcattatcca 168  Q
    ||||||||||| ||||| || | ||||||||| || ||||| |||||| | ||||| ||||||   ||||||| ||| || |||| ||| ||||||||||    
T  238965 gccttggatatatcaagctttaaagccacctcgccaattttaccttttttcttgcatcgcataaagtgaagaatttcaaaggctgatagagcattatcca 239064  T
Q  169 tgattgagcgagaatgcacaaaggctgc 196  Q
    |||| || | |||  | |||||||||||    
T  239065 tgatggatctagatggaacaaaggctgc 239092  T

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