View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_167 (Length: 260)
Name: NF10092A_low_167
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_167 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 87611 - 87361
Alignment:
| Q |
2 |
acttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcac |
101 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87611 |
acttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcac |
87512 |
T |
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| Q |
102 |
aagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87511 |
aagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtc |
87412 |
T |
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| Q |
202 |
cacactcttgttcacatttttaaatttcttctttgactccatattcatctc |
252 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
87411 |
cacactcttgttcacatttttcaatttcttctttgactccatattcatctc |
87361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 95627 - 95391
Alignment:
| Q |
2 |
acttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcac |
101 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |
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| T |
95627 |
acttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcac |
95528 |
T |
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| Q |
102 |
aagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtc |
201 |
Q |
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| T |
95527 |
aagcatgctcggcgtgaccctgagggaagtaaaagacctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg--------------c |
95442 |
T |
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| Q |
202 |
cacactcttgttcacatttttaaatttcttctttgactccatattcatctc |
252 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
95441 |
cacactcttgttcacatttttcaatttcttttttgactccatattcatctc |
95391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 40878672 - 40878922
Alignment:
| Q |
2 |
acttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcac |
101 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878672 |
acttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcac |
40878771 |
T |
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| Q |
102 |
aagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878772 |
aagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtc |
40878871 |
T |
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| Q |
202 |
cacactcttgttcacatttttaaatttcttctttgactccatattcatctc |
252 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40878872 |
cacactcttgttcacatttttcaatttcttctttgactccatattcatctc |
40878922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 40870655 - 40870891
Alignment:
| Q |
2 |
acttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcac |
101 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |
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| T |
40870655 |
acttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcac |
40870754 |
T |
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| Q |
102 |
aagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtc |
201 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| | |
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| T |
40870755 |
aagcatgctcggcgtgaccctgagggaagtaaaagacctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg--------------c |
40870840 |
T |
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| Q |
202 |
cacactcttgttcacatttttaaatttcttctttgactccatattcatctc |
252 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
40870841 |
cacactcttgttcacatttttcaatttcttttttgactccatattcatctc |
40870891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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