View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10092A_low_169 (Length: 260)

Name: NF10092A_low_169
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10092A_low_169
NF10092A_low_169
[»] chr2 (13 HSPs)
chr2 (20-245)||(39215669-39215894)
chr2 (26-164)||(39192266-39192404)
chr2 (26-164)||(39197946-39198084)
chr2 (23-160)||(39370254-39370394)
chr2 (91-193)||(39222932-39223037)
chr2 (23-193)||(39161931-39162104)
chr2 (23-193)||(39207090-39207263)
chr2 (25-164)||(39388918-39389059)
chr2 (27-164)||(39381275-39381412)
chr2 (119-164)||(39421688-39421733)
chr2 (127-164)||(39468448-39468485)
chr2 (32-85)||(39223101-39223154)
chr2 (127-171)||(39459387-39459431)
[»] chr5 (2 HSPs)
chr5 (23-164)||(33561135-33561281)
chr5 (119-159)||(17059602-17059642)
[»] chr7 (1 HSPs)
chr7 (67-163)||(19807963-19808059)
[»] chr6 (1 HSPs)
chr6 (127-164)||(16113441-16113478)
[»] chr8 (1 HSPs)
chr8 (33-148)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 39215894 - 39215669
Alignment:
Q  20 acaaagacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215894 acaaagacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtatt 39215795  T
Q  120 gaaactctttcaataaactagatgaataagaacatttacccgattgtgtttcttcaatatattttttcattgacccaagcttcgtcggtcgtaaatcgaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39215794 gaaactctttcaataaactagatgaataagaacatttacccgattgtgtttcttcaatatattttttccttgacccaagcttcgtcggtcgtaaatcgaa 39215695  T
Q  220 ttttttcaactttaacttaggatcct 245  Q
    ||||||||||||||||||||||||||    
T  39215694 ttttttcaactttaacttaggatcct 39215669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 39192266 - 39192404
Alignment:
Q  26 acataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaaact 125  Q
    ||||| ||||||||||||||||||||| |||||||| || || |||||||  |||||||||| | |||||||||||||||||||  |||| | ||||| |    
T  39192266 acatagaacattaacatgattaaaaatgtttttaaagaattaagtagatcatgttataaaaaatatcatcatcattaagaggaatagttgcaatgaaatt 39192365  T
Q  126 ctttcaataaactagatgaataagaacatttacccgatt 164  Q
    || ||||||||  ||||||||||| ||||||||| ||||    
T  39192366 ctgtcaataaataagatgaataagcacatttacctgatt 39192404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 39197946 - 39198084
Alignment:
Q  26 acataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaaact 125  Q
    ||||| ||||||||||||||||||||| |||||||| || || |||||||  |||||||||| | |||||||||||||||||||  |||| | ||||| |    
T  39197946 acatagaacattaacatgattaaaaatgtttttaaagaattaagtagatcatgttataaaaaatatcatcatcattaagaggaatagttgcaatgaaatt 39198045  T
Q  126 ctttcaataaactagatgaataagaacatttacccgatt 164  Q
    || ||||||||  ||||||||||| ||||||||| ||||    
T  39198046 ctgtcaataaataagatgaataagcacatttacctgatt 39198084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 39370394 - 39370254
Alignment:
Q  23 aagacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcat---taagaggaaccgttgtatt 119  Q
    |||||||| ||||||||||||||||| ||| |||||| | |||||| |||||||||||||||||| | ||||||||||   |||| |||||  || || |    
T  39370394 aagacatacaacattaacatgattaagaatgtttttatagaactatatagatcgggttataaaaaatatcatcatcatcattaagtggaacaattataat 39370295  T
Q  120 gaaactctttcaataaactagatgaataagaacatttaccc 160  Q
    |||| |   ||||||||||||||||||||||||||||||||    
T  39370294 gaaattaaatcaataaactagatgaataagaacatttaccc 39370254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 39223037 - 39222932
Alignment:
Q  91 tcatcatcattaagaggaaccgttgtattgaaactctttcaataaactagatgaataagaacatttacccgattgtgtttct---tcaatatattttttc 187  Q
    |||||||||||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||||||||||||| | |||||   |||||||||||||||    
T  39223037 tcatcatcattaagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttctccatcaatatattttttc 39222938  T
Q  188 attgac 193  Q
     |||||    
T  39222937 cttgac 39222932  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 39162104 - 39161931
Alignment:
Q  23 aagacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaa 122  Q
    |||||||| ||||||||||||| ||||||  | |||||| || || ||||||| || |  ||||| | ||||||||||||| |||||| ||| || | ||    
T  39162104 aagacatacaacattaacatgagtaaaaacgtgtttaaaaaattaagtagatcaggattcaaaaaatatcatcatcattaaaaggaacagttataataaa 39162005  T
Q  123 actctttcaataaactagatgaataagaacatttacccgattgtgtt---tcttcaatatattttttcattgac 193  Q
    | ||||||||||| ||||||||| ||||||||||||| |||| | ||   || ||||||||||||||| |||||    
T  39162004 attctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgac 39161931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 39207090 - 39207263
Alignment:
Q  23 aagacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaa 122  Q
    |||||||| ||||||||||||| ||||||  | |||||| || || ||||||| || |  ||||| | ||||||||||||| |||||| ||| || | ||    
T  39207090 aagacatacaacattaacatgagtaaaaacgtgtttaaaaaattaagtagatcaggattcaaaaaatatcatcatcattaaaaggaacagttataataaa 39207189  T
Q  123 actctttcaataaactagatgaataagaacatttacccgattgtgtt---tcttcaatatattttttcattgac 193  Q
    | ||||||||||| ||||||||| ||||||||||||| |||| | ||   || ||||||||||||||| |||||    
T  39207190 attctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgac 39207263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 39388918 - 39389059
Alignment:
Q  25 gacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaat--tgtcatcatcattaagaggaaccgttgtattgaa 122  Q
    |||||| ||||||||||||||||||||  ||| ||   || || |||||||  | ||||||||   | |||||||||||||||||||| ||||||   ||    
T  39388918 gacatacaacattaacatgattaaaaacgtttctatggaattaagtagatcaagctataaaaaaaatatcatcatcattaagaggaacagttgtaaaaaa 39389017  T
Q  123 actctttcaataaactagatgaataagaacatttacccgatt 164  Q
    | |||||||||||||| |||||||||||||||||||| ||||    
T  39389018 attctttcaataaactggatgaataagaacatttaccggatt 39389059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 39381275 - 39381412
Alignment:
Q  27 cataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaaactc 126  Q
    |||| |||||||||| ||||||||||||||||||  || ||||||||||  ||||  |||| | ||| ||||||||| || |||   || | ||||| ||    
T  39381275 catacaacattaacacgattaaaaatatttttaatgaattatgtagatcaagttaataaaagtatcaacatcattaaaagaaacaactgaaatgaaattc 39381374  T
Q  127 tttcaataaactagatgaataagaacatttacccgatt 164  Q
    ||||| ||||||| ||||||||||||||||||| ||||    
T  39381375 tttcagtaaactatatgaataagaacatttaccagatt 39381412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 39421688 - 39421733
Alignment:
Q  119 tgaaactctttcaataaactagatgaataagaacatttacccgatt 164  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  39421688 tgaaactctttcaataaattagatgaataagaacatttaccagatt 39421733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 39468485 - 39468448
Alignment:
Q  127 tttcaataaactagatgaataagaacatttacccgatt 164  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  39468485 tttcaataaactagatgaataagaacatttaccagatt 39468448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 39223154 - 39223101
Alignment:
Q  32 aacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaa 85  Q
    |||||||||||||||||||||||| ||||| || || ||||||| |||| ||||    
T  39223154 aacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaa 39223101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 39459431 - 39459387
Alignment:
Q  127 tttcaataaactagatgaataagaacatttacccgattgtgtttc 171  Q
    ||||||||| ||| ||||||||||||| |||||||||| ||||||    
T  39459431 tttcaataagctaaatgaataagaacacttacccgattctgtttc 39459387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 33561281 - 33561135
Alignment:
Q  23 aagacata-aaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataa----aaattgtcatcatcattaagaggaaccgttgta 117  Q
    |||||||| |||||||||||||||||||||| | ||||||  | || ||||||| || |||||    ||||  ||||||||| | ||||||||  || ||    
T  33561281 aagacatacaaacattaacatgattaaaaatgtgtttaaaggattaagtagatcaggatataacaaaaaatcatcatcatcactgagaggaacacttata 33561182  T
Q  118 ttgaaactctttcaataaactagatgaataagaacatttacccgatt 164  Q
     | ||| ||||||||||||||||||||| ||||||||||||| ||||    
T  33561181 ataaaattctttcaataaactagatgaagaagaacatttaccggatt 33561135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 17059642 - 17059602
Alignment:
Q  119 tgaaactctttcaataaactagatgaataagaacatttacc 159  Q
    ||||| ||||| |||||||||||||||||| ||||||||||    
T  17059642 tgaaattcttttaataaactagatgaataacaacatttacc 17059602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 19808059 - 19807963
Alignment:
Q  67 atgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaaactctttcaataaactagatgaataagaacatttacccgat 163  Q
    ||||||||| |||||| |||| | ||| |||||| || || ||| | || | |||||||| ||| ||||||||||||||||||||| ||||||||||    
T  19808059 atgtagatcaggttattaaaaatatcaacatcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttacccgat 19807963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 16113478 - 16113441
Alignment:
Q  127 tttcaataaactagatgaataagaacatttacccgatt 164  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  16113478 tttcaataaactagatgaatgagaacacttacccgatt 16113441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 45342305 - 45342187
Alignment:
Q  33 acattaacatgattaaaaatat---ttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaaactcttt 129  Q
    |||||||||| |||||| ||||   |||||||  | |||||||||| |||||| |||| | ||| |||||  || || ||  |||| | ||||| |||||    
T  45342305 acattaacatcattaaacatatattttttaaaagaatatgtagatcaggttattaaaaatatcaacatcaacaaaagaaatagttgaaatgaaattcttt 45342206  T
Q  130 caataaactagatgaataa 148  Q
    |||||||||||||||||||    
T  45342205 caataaactagatgaataa 45342187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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