View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10092A_low_177 (Length: 256)
Name: NF10092A_low_177
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_177 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 37479446 - 37479698
Alignment:
| Q |
1 |
taagttattagttttatatcatgtaagaatgactaaatgaatgatatataagagaagcgtttgagcatagagcacatttgaaagagttcacacaatacta |
100 |
Q |
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| T |
37479446 |
taagttattagttttatatcatgtaagaatgaataaatgaatgatatataagataagcgttggagcatagagcacatttgaaagagttcacacaatacta |
37479545 |
T |
|
| Q |
101 |
ggacatataaggtggaggtaggatacttagcgtgt---------tgggtatctgattttgtgatcaggaaaggacacactcaacttgaccaccacacatg |
191 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37479546 |
ggacatataaggtggaggtaggatacttagcgtgttcttctatatgaatatctgattttgtgatcaggaaaggacacactcaacttgaccaccacacgtg |
37479645 |
T |
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| Q |
192 |
ttgcagctatttgacaagcccgagctgagtggtatttttattatattattgga |
244 |
Q |
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|||| |||||||||||||| ||||||| |||||||||||||||| || ||||| |
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| T |
37479646 |
ttgccgctatttgacaagctcgagctgtgtggtatttttattatttttttgga |
37479698 |
T |
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