View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10092A_low_180 (Length: 255)
Name: NF10092A_low_180
Description: NF10092A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10092A_low_180 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 1831845 - 1831613
Alignment:
| Q |
4 |
agggtcaactagctccttatcttcattctttacacacctaaggt-cacttcagatggggtagatgcaggattgaagcccatcatgttgaatctctttaaa |
102 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| | |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1831845 |
agggtcaactagctcttcatcttcattctttacaagcttaagattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
1831746 |
T |
|
| Q |
103 |
atatttgtagcatatttcttctggtgcaccactaaacattatgaatttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| ||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
1831745 |
atatttgtagcatatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatcagtcatct |
1831646 |
T |
|
| Q |
203 |
caaattctctcatcatttgtcttttgaaatttt |
235 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| |
|
|
| T |
1831645 |
caaattctgtcatcatttgtcttttgaattttt |
1831613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 9817073 - 9816931
Alignment:
| Q |
88 |
ttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaatttttagtgaattccatcccaaggaaatattttaactttc |
187 |
Q |
| |
|
||||||||||| ||||||| | | ||||||||||||| ||||| |||||| | | ||| ||||||||||||| || |||| ||||||| ||||| ||| |
|
|
| T |
9817073 |
ttgaatctcttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttc |
9816974 |
T |
|
| Q |
188 |
ccaaatcttccatctcaaattctctcatcatttgtcttttgaa |
230 |
Q |
| |
|
||||| | ||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
9816973 |
ccaaaccagtcatgtcaaactctttcatcatttgtcttttgaa |
9816931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 15490441 - 15490592
Alignment:
| Q |
81 |
catcatgttgaatctctttaaaatatttgtagcatattt--cttctggtgcaccactaaacattatgaatttttagtgaattccatcccaaggaaatatt |
178 |
Q |
| |
|
|||||||||||||||||| | ||||| || ||| ||| |||||| |||| | |||||| || | || ||| | |||||||||| ||||||| ||| |
|
|
| T |
15490441 |
catcatgttgaatctcttaagaatatcaataacatgtttatcttctgatgcatccctaaaccttttaaagtttaattgaattccatttcaaggaagtata |
15490540 |
T |
|
| Q |
179 |
ttaactttcccaaatcttccatctcaaattctctcatcatttgtcttttgaa |
230 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||| |||| |
|
|
| T |
15490541 |
ttaactttcccaaatcagccatatcaaattctctcatcatttgtcttatgaa |
15490592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 16944109 - 16944223
Alignment:
| Q |
116 |
atttcttctggtgcaccactaaacattatgaatttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
215 |
Q |
| |
|
||||||||||||||| |||||| | | ||| ||| ||||||||| || |||||||| ||| |||||||||||||| ||| || |||||| |||| |
|
|
| T |
16944109 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
16944208 |
T |
|
| Q |
216 |
catttgtcttttgaa |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16944209 |
catttgtcttttgaa |
16944223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 17014774 - 17014888
Alignment:
| Q |
116 |
atttcttctggtgcaccactaaacattatgaatttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
215 |
Q |
| |
|
||||||||||||||| |||||| | | ||| ||| ||||||||| || |||||||| ||| |||||||||||||| ||| || |||||| |||| |
|
|
| T |
17014774 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
17014873 |
T |
|
| Q |
216 |
catttgtcttttgaa |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17014874 |
catttgtcttttgaa |
17014888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 30065337 - 30065210
Alignment:
| Q |
61 |
gtagatgcaggattgaagcccatcatgttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaatttttagtgaatt |
160 |
Q |
| |
|
||||||||||||||| || || ||||||||| ||||| | ||||| | |||||| |||||||| ||| |||| || || ||| |||||||||||| |
|
|
| T |
30065337 |
gtagatgcaggattgcagttcaacatgttgaacctcttgagaatatcagaagcatacttcttctgatgcttaactagaccttcagaagttttagtgaatt |
30065238 |
T |
|
| Q |
161 |
ccatcccaaggaaatattttaactttcc |
188 |
Q |
| |
|
|||| |||||||| ||| |||||||||| |
|
|
| T |
30065237 |
ccataccaaggaagtatgttaactttcc |
30065210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University